Analysis of interatomic Contacts of Structural Units in PDB entry:
6RAK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RAK entry

There are 3 chains in PDB entry 6RAK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11GLN 598
B
 SER 5GLU 575
C
 GLN 3SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 6RAK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 20Right-handed alpha
Helix 2
AA2
A
25 44Right-handed alpha
Helix 3
AA3
A
45 57Right-handed alpha
Helix 4
AA4
A
72 118Right-handed alpha
Helix 5
AA5
A
121 128Right-handed alpha
Helix 6
AA6
A
129 138Right-handed alpha
Helix 7
AA7
A
139 156Right-handed alpha
Helix 8
AA8
A
156 173Right-handed alpha
Helix 9
AA9
A
173 181Right-handed alpha
Helix 10
AB1
A
183 222Right-handed alpha
Helix 11
AB2
A
222 229Right-handed alpha
Helix 12
AB3
A
233 278Right-handed alpha
Helix 13
AB4
A
279 286Right-handed alpha
Helix 14
AB5
A
289 313Right-handed alpha
Helix 15
AB6
A
313 331Right-handed alpha
Helix 16
AB7
A
399 405Right-handed alpha
Helix 17
AB8
A
425 427Right-handed 310
Helix 18
AB9
A
428 433Right-handed alpha
Helix 19
AC1
A
449 455Right-handed alpha
Helix 20
AC2
A
462 473Right-handed alpha
Helix 21
AC3
A
475 480Right-handed alpha
Helix 22
AC4
A
484 488Right-handed 310
Helix 23
AC5
A
491 495Right-handed 310
Helix 24
AC6
A
500 512Right-handed alpha
Helix 25
AC7
A
529 541Right-handed alpha
Helix 26
AC8
A
578 585Right-handed alpha
Helix 27
AC9
A
586 597Right-handed alpha
Helix 28
AD1
B
6 18Right-handed alpha
Helix 29
AD2
B
24 53Right-handed alpha
Helix 30
AD3
B
58 84Right-handed alpha
Helix 31
AD4
B
84 103Right-handed alpha
Helix 32
AD5
B
106 113Right-handed alpha
Helix 33
AD6
B
114 128Right-handed alpha
Helix 34
AD7
B
134 158Right-handed alpha
Helix 35
AD8
B
158 165Right-handed alpha
Helix 36
AD9
B
166 168Right-handed 310
Helix 37
AE1
B
169 174Right-handed alpha
Helix 38
AE2
B
175 207Right-handed alpha
Helix 39
AE3
B
207 214Right-handed alpha
Helix 40
AE4
B
218 262Right-handed alpha
Helix 41
AE5
B
265 271Right-handed alpha
Helix 42
AE6
B
274 285Right-handed alpha
Helix 43
AE7
B
288 294Right-handed alpha
Helix 44
AE8
B
294 317Right-handed alpha
Helix 45
AE9
B
376 381Right-handed alpha
Helix 46
AF1
B
406 411Right-handed alpha
Helix 47
AF2
B
428 433Right-handed alpha
Helix 48
AF3
B
440 451Right-handed alpha
Helix 49
AF4
B
453 459Right-handed alpha
Helix 50
AF5
B
462 466Right-handed 310
Helix 51
AF6
B
469 473Right-handed 310
Helix 52
AF7
B
476 490Right-handed alpha
Helix 53
AF8
B
506 517Right-handed alpha
Helix 54
AF9
B
535 539Right-handed 310
Helix 55
AG1
B
555 561Right-handed alpha
Helix 56
AG2
B
565 574Right-handed alpha
Helix 57
AG3
C
87 91Right-handed 310
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There are 6 sheets in PDB entry 6RAK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 383first strand
Strand 2
A
353 360anti-parallel
Strand 3
A
414 419anti-parallel
Strand 4
A
422 423anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 439first strand
Strand 2
A
518 522parallel
Strand 3
A
549 552parallel
Strand 4
A
388 393parallel
Strand 5
A
564 569parallel
Strand 6
A
572 577anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 361first strand
Strand 2
B
339 348anti-parallel
Strand 3
B
392 397anti-parallel
Strand 4
B
400 401anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 417first strand
Strand 2
B
495 499parallel
Strand 3
B
525 529parallel
Strand 4
B
366 371parallel
Strand 5
B
541 546parallel
Strand 6
B
549 554anti-parallel
Strand 7
C
101 103anti-parallel
Strand 8
C
107 109anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 97anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
45 52anti-parallel
Strand 6
C
58 60anti-parallel
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