Analysis of interatomic Contacts of Structural Units in PDB entry:
6RAL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RAL entry

There are 3 chains in PDB entry 6RAL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11TYR 593
B
 SER 5GLU 575
C
 GLN 3SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 68 helices in PDB entry 6RAL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 23Right-handed alpha
Helix 2
AA2
A
25 30Right-handed alpha
Helix 3
AA3
A
30 44Right-handed alpha
Helix 4
AA4
A
47 55Right-handed alpha
Helix 5
AA5
A
70 118Right-handed alpha
Helix 6
AA6
A
123 128Right-handed alpha
Helix 7
AA7
A
129 134Right-handed alpha
Helix 8
AA8
A
138 152Right-handed alpha
Helix 9
AA9
A
156 159Right-handed 310
Helix 10
AB1
A
160 165Right-handed alpha
Helix 11
AB2
A
165 173Right-handed alpha
Helix 12
AB3
A
173 181Right-handed alpha
Helix 13
AB4
A
183 200Right-handed alpha
Helix 14
AB5
A
201 216Right-handed alpha
Helix 15
AB6
A
217 222Right-handed alpha
Helix 16
AB7
A
223 228Right-handed alpha
Helix 17
AB8
A
231 242Right-handed alpha
Helix 18
AB9
A
243 249Right-handed alpha
Helix 19
AC1
A
253 276Right-handed alpha
Helix 20
AC2
A
279 286Right-handed alpha
Helix 21
AC3
A
289 294Right-handed alpha
Helix 22
AC4
A
296 304Right-handed alpha
Helix 23
AC5
A
304 313Right-handed alpha
Helix 24
AC6
A
313 322Right-handed alpha
Helix 25
AC7
A
323 331Right-handed alpha
Helix 26
AC8
A
399 403Right-handed 310
Helix 27
AC9
A
423 427Right-handed 310
Helix 28
AD1
A
428 435Right-handed alpha
Helix 29
AD2
A
462 473Right-handed alpha
Helix 30
AD3
A
475 482Right-handed alpha
Helix 31
AD4
A
484 487Right-handed 310
Helix 32
AD5
A
504 513Right-handed alpha
Helix 33
AD6
A
529 541Right-handed alpha
Helix 34
AD7
A
578 586Right-handed alpha
Helix 35
AD8
A
588 593Right-handed alpha
Helix 36
AD9
B
7 12Right-handed alpha
Helix 37
AE1
B
13 18Right-handed alpha
Helix 38
AE2
B
20 25Right-handed alpha
Helix 39
AE3
B
28 37Right-handed alpha
Helix 40
AE4
B
42 53Right-handed alpha
Helix 41
AE5
B
59 71Right-handed alpha
Helix 42
AE6
B
81 86Right-handed alpha
Helix 43
AE7
B
87 101Right-handed alpha
Helix 44
AE8
B
106 111Right-handed alpha
Helix 45
AE9
B
114 124Right-handed alpha
Helix 46
AF1
B
126 133Right-handed alpha
Helix 47
AF2
B
134 155Right-handed alpha
Helix 48
AF3
B
158 163Right-handed alpha
Helix 49
AF4
B
168 190Right-handed alpha
Helix 50
AF5
B
193 206Right-handed alpha
Helix 51
AF6
B
207 214Right-handed alpha
Helix 52
AF7
B
223 226Right-handed 310
Helix 53
AF8
B
227 236Right-handed alpha
Helix 54
AF9
B
248 269Right-handed alpha
Helix 55
AG1
B
274 285Right-handed alpha
Helix 56
AG2
B
294 308Right-handed alpha
Helix 57
AG3
B
308 313Right-handed alpha
Helix 58
AG4
B
376 381Right-handed alpha
Helix 59
AG5
B
403 405Right-handed 310
Helix 60
AG6
B
406 411Right-handed alpha
Helix 61
AG7
B
428 433Right-handed alpha
Helix 62
AG8
B
441 448Right-handed alpha
Helix 63
AG9
B
453 459Right-handed alpha
Helix 64
AH1
B
480 489Right-handed alpha
Helix 65
AH2
B
506 518Right-handed alpha
Helix 66
AH3
B
532 538Right-handed alpha
Helix 67
AH4
B
563 572Right-handed alpha
Helix 68
AH5
C
87 91Right-handed 310
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There are 7 sheets in PDB entry 6RAL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 379first strand
Strand 2
A
353 361anti-parallel
Strand 3
A
414 419anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 439first strand
Strand 2
A
518 522parallel
Strand 3
A
549 552parallel
Strand 4
A
389 393parallel
Strand 5
A
564 569parallel
Strand 6
A
572 577anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 449first strand
Strand 2
A
489 490anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 361first strand
Strand 2
B
339 348anti-parallel
Strand 3
B
392 397anti-parallel
Strand 4
B
400 401anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 417first strand
Strand 2
B
495 499parallel
Strand 3
B
525 529parallel
Strand 4
B
367 371parallel
Strand 5
B
541 545parallel
Strand 6
B
550 554anti-parallel
Strand 7
C
101 103anti-parallel
Strand 8
C
107 109anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 97anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
45 52anti-parallel
Strand 6
C
58 60anti-parallel
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