Analysis of interatomic Contacts of Structural Units in PDB entry:
6RAM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RAM entry

There are 3 chains in PDB entry 6RAM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11GLN 598
B
 ARG 4GLU 575
C
 GLN 3SER 123
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 57 helices in PDB entry 6RAM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 20Right-handed alpha
Helix 2
AA2
A
21 28Right-handed 310
Helix 3
AA3
A
29 45Right-handed alpha
Helix 4
AA4
A
47 56Right-handed alpha
Helix 5
AA5
A
64 70Right-handed alpha
Helix 6
AA6
A
72 120Right-handed alpha
Helix 7
AA7
A
129 138Right-handed alpha
Helix 8
AA8
A
138 155Right-handed alpha
Helix 9
AA9
A
157 171Right-handed alpha
Helix 10
AB1
A
173 182Right-handed alpha
Helix 11
AB2
A
183 196Right-handed alpha
Helix 12
AB3
A
198 221Right-handed alpha
Helix 13
AB4
A
222 228Right-handed alpha
Helix 14
AB5
A
233 285Right-handed alpha
Helix 15
AB6
A
289 304Right-handed alpha
Helix 16
AB7
A
304 313Right-handed alpha
Helix 17
AB8
A
313 332Right-handed alpha
Helix 18
AB9
A
398 408Right-handed alpha
Helix 19
AC1
A
425 427Right-handed 310
Helix 20
AC2
A
428 435Right-handed alpha
Helix 21
AC3
A
450 455Right-handed alpha
Helix 22
AC4
A
462 473Right-handed alpha
Helix 23
AC5
A
475 480Right-handed alpha
Helix 24
AC6
A
484 487Right-handed 310
Helix 25
AC7
A
491 495Right-handed 310
Helix 26
AC8
A
498 512Right-handed alpha
Helix 27
AC9
A
529 544Right-handed alpha
Helix 28
AD1
A
555 561Right-handed alpha
Helix 29
AD2
A
578 586Right-handed alpha
Helix 30
AD3
A
587 598Right-handed alpha
Helix 31
AD4
B
6 14Right-handed alpha
Helix 32
AD5
B
15 17Right-handed 310
Helix 33
AD6
B
20 37Right-handed alpha
Helix 34
AD7
B
40 52Right-handed alpha
Helix 35
AD8
B
58 103Right-handed alpha
Helix 36
AD9
B
106 113Right-handed alpha
Helix 37
AE1
B
114 133Right-handed alpha
Helix 38
AE2
B
134 156Right-handed alpha
Helix 39
AE3
B
158 166Right-handed alpha
Helix 40
AE4
B
167 207Right-handed alpha
Helix 41
AE5
B
207 214Right-handed alpha
Helix 42
AE6
B
217 270Right-handed alpha
Helix 43
AE7
B
274 317Right-handed alpha
Helix 44
AE8
B
331 335Right-handed 310
Helix 45
AE9
B
376 383Right-handed alpha
Helix 46
AF1
B
401 405Right-handed 310
Helix 47
AF2
B
406 411Right-handed alpha
Helix 48
AF3
B
427 433Right-handed alpha
Helix 49
AF4
B
440 451Right-handed alpha
Helix 50
AF5
B
453 460Right-handed alpha
Helix 51
AF6
B
462 466Right-handed 310
Helix 52
AF7
B
476 491Right-handed alpha
Helix 53
AF8
B
506 520Right-handed alpha
Helix 54
AF9
B
532 538Right-handed alpha
Helix 55
AG1
B
558 562Right-handed 310
Helix 56
AG2
B
564 575Right-handed alpha
Helix 57
AG3
C
87 91Right-handed 310
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There are 8 sheets in PDB entry 6RAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 379first strand
Strand 2
A
353 360anti-parallel
Strand 3
A
382 383anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
376 379first strand
Strand 2
A
353 360anti-parallel
Strand 3
A
414 419anti-parallel
Strand 4
A
422 423anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
436 439first strand
Strand 2
A
518 521parallel
Strand 3
A
549 551parallel
Strand 4
A
388 391parallel
Strand 5
A
565 569parallel
Strand 6
A
572 577anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
448 449first strand
Strand 2
A
489 490anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
351 361first strand
Strand 2
B
339 348anti-parallel
Strand 3
B
392 397anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
414 417first strand
Strand 2
B
495 499parallel
Strand 3
B
525 529parallel
Strand 4
B
366 371parallel
Strand 5
B
541 546parallel
Strand 6
B
549 554anti-parallel
Strand 7
C
101 103anti-parallel
Strand 8
C
107 109anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 7first strand
Strand 2
C
18 24anti-parallel
Strand 3
C
78 83anti-parallel
Strand 4
C
68 73anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
11 12first strand
Strand 2
C
118 122parallel
Strand 3
C
92 97anti-parallel
Strand 4
C
33 39anti-parallel
Strand 5
C
45 52anti-parallel
Strand 6
C
58 60anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il