Analysis of interatomic Contacts of Structural Units in PDB entry:
6RAO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RAO entry

There are 10 chains in PDB entry 6RAO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ALA 149
B	ALA 2	ALA 149
C	THR 4	GLN 354
D	VAL 4	MET 449
F	MET 1	LEU 149
H	ASP 4	LEU 140
E	THR 2	ASP 406
G	SER 2	LYS 225
I	THR 19	ASP 592
J	GLU 4	PRO 598

There are 87 helices in PDB entry 6RAO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	12	Right-handed alpha
Helix 2	AA2	A	77	82	Right-handed alpha
Helix 3	AA3	B	7	12	Right-handed alpha
Helix 4	AA4	B	77	82	Right-handed alpha
Helix 5	AA5	C	51	57	Right-handed alpha
Helix 6	AA6	C	65	76	Right-handed alpha
Helix 7	AA7	C	92	98	Right-handed alpha
Helix 8	AA8	C	111	122	Right-handed alpha
Helix 9	AA9	C	142	147	Right-handed alpha
Helix 10	AB1	C	172	188	Right-handed alpha
Helix 11	AB2	C	209	214	Right-handed alpha
Helix 12	AB3	C	249	268	Right-handed alpha
Helix 13	AB4	C	269	271	Right-handed 310
Helix 14	AB5	C	276	296	Right-handed alpha
Helix 15	AB6	C	320	325	Right-handed alpha
Helix 16	AB7	D	52	60	Right-handed alpha
Helix 17	AB8	D	110	121	Right-handed alpha
Helix 18	AB9	D	136	142	Right-handed alpha
Helix 19	AC1	D	142	150	Right-handed alpha
Helix 20	AC2	D	162	173	Right-handed alpha
Helix 21	AC3	D	174	177	Right-handed 310
Helix 22	AC4	D	270	285	Right-handed alpha
Helix 23	AC5	D	307	312	Right-handed alpha
Helix 24	AC6	D	346	365	Right-handed alpha
Helix 25	AC7	D	366	368	Right-handed 310
Helix 26	AC8	D	373	393	Right-handed alpha
Helix 27	AC9	D	417	423	Right-handed alpha
Helix 28	AD1	F	75	84	Right-handed alpha
Helix 29	AD2	H	5	10	Right-handed alpha
Helix 30	AD3	H	31	45	Right-handed alpha
Helix 31	AD4	H	59	64	Right-handed 310
Helix 32	AD5	H	71	88	Right-handed alpha
Helix 33	AD6	H	132	139	Right-handed 310
Helix 34	AD7	E	22	25	Right-handed 310
Helix 35	AD8	E	51	60	Right-handed alpha
Helix 36	AD9	E	64	74	Right-handed alpha
Helix 37	AE1	E	94	104	Right-handed alpha
Helix 38	AE2	E	105	113	Right-handed alpha
Helix 39	AE3	E	124	130	Right-handed 310
Helix 40	AE4	E	149	167	Right-handed alpha
Helix 41	AE5	E	183	188	Right-handed alpha
Helix 42	AE6	E	192	197	Right-handed alpha
Helix 43	AE7	E	222	233	Right-handed alpha
Helix 44	AE8	E	301	320	Right-handed alpha
Helix 45	AE9	E	321	323	Right-handed 310
Helix 46	AF1	E	328	348	Right-handed alpha
Helix 47	AF2	E	356	359	Right-handed 310
Helix 48	AF3	E	372	378	Right-handed alpha
Helix 49	AF4	G	84	96	Right-handed alpha
Helix 50	AF5	G	157	167	Right-handed alpha
Helix 51	AF6	G	182	191	Right-handed alpha
Helix 52	AF7	G	200	207	Right-handed alpha
Helix 53	AF8	I	26	38	Right-handed alpha
Helix 54	AF9	I	39	41	Right-handed 310
Helix 55	AG1	I	51	56	Right-handed alpha
Helix 56	AG2	I	60	70	Right-handed alpha
Helix 57	AG3	I	71	74	Right-handed 310
Helix 58	AG4	I	79	100	Right-handed alpha
Helix 59	AG5	I	101	113	Right-handed alpha
Helix 60	AG6	I	392	406	Right-handed alpha
Helix 61	AG7	I	414	424	Right-handed alpha
Helix 62	AG8	I	434	439	Right-handed alpha
Helix 63	AG9	I	469	482	Right-handed alpha
Helix 64	AH1	I	515	528	Right-handed alpha
Helix 65	AH2	I	547	556	Right-handed alpha
Helix 66	AH3	J	7	12	Right-handed alpha
Helix 67	AH4	J	17	32	Right-handed alpha
Helix 68	AH5	J	43	63	Right-handed alpha
Helix 69	AH6	J	66	71	Right-handed alpha
Helix 70	AH7	J	81	85	Right-handed 310
Helix 71	AH8	J	99	105	Right-handed alpha
Helix 72	AH9	J	185	201	Right-handed alpha
Helix 73	AI1	J	236	248	Right-handed alpha
Helix 74	AI2	J	257	263	Right-handed alpha
Helix 75	AI3	J	267	272	Right-handed alpha
Helix 76	AI4	J	349	354	Right-handed 310
Helix 77	AI5	J	377	382	Right-handed alpha
Helix 78	AI6	J	409	413	Right-handed 310
Helix 79	AI7	J	432	438	Right-handed alpha
Helix 80	AI8	J	438	453	Right-handed alpha
Helix 81	AI9	J	454	459	Right-handed alpha
Helix 82	AJ1	J	480	485	Right-handed alpha
Helix 83	AJ2	J	488	499	Right-handed alpha
Helix 84	AJ3	J	512	526	Right-handed alpha
Helix 85	AJ4	J	540	554	Right-handed alpha
Helix 86	AJ5	J	556	561	Right-handed alpha
Helix 87	AJ6	J	572	581	Right-handed alpha

There are 36 sheets in PDB entry 6RAO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	19	23	anti-parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	106	121	anti-parallel
Strand 5	A	134	140	anti-parallel
Strand 6	A	63	69	anti-parallel
Strand 7	A	32	34	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	19	23	anti-parallel
Strand 3	A	92	99	anti-parallel
Strand 4	A	106	121	anti-parallel
Strand 5	A	144	148	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	46	first strand
Strand 2	A	52	56	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	106	121	anti-parallel
Strand 5	B	134	140	anti-parallel
Strand 6	B	63	69	anti-parallel
Strand 7	B	32	34	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	106	121	anti-parallel
Strand 5	B	144	147	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	46	first strand
Strand 2	B	52	56	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	49	first strand
Strand 2	C	82	86	anti-parallel
Strand 3	C	30	34	parallel
Strand 4	C	102	105	parallel
Strand 5	C	127	129	parallel
Strand 6	C	156	157	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	226	first strand
Strand 2	C	234	235	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	312	first strand
Strand 2	C	332	335	anti-parallel
Strand 3	D	445	446	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	328	330	first strand
Strand 2	D	440	442	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	352	first strand
Strand 2	E	380	389	parallel
Strand 3	E	361	363	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	127	130	parallel
Strand 3	D	48	49	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	188	first strand
Strand 2	D	204	207	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	268	first strand
Strand 2	D	211	213	anti-parallel
Strand 3	D	301	302	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	322	325	first strand
Strand 2	D	329	332	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	406	409	first strand
Strand 2	D	429	432	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	23	24	first strand
Strand 2	F	10	15	anti-parallel
Strand 3	F	91	98	anti-parallel
Strand 4	F	110	120	anti-parallel
Strand 5	F	141	142	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	63	68	first strand
Strand 2	F	132	138	anti-parallel
Strand 3	F	110	120	anti-parallel
Strand 4	F	91	98	anti-parallel
Strand 5	F	104	107	anti-parallel
Strand 6	F	145	146	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	35	36	first strand
Strand 2	F	59	60	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	39	41	first strand
Strand 2	F	53	55	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	12	14	first strand
Strand 2	H	28	30	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	95	100	first strand
Strand 2	H	107	113	anti-parallel
Strand 3	E	395	401	parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	47	49	first strand
Strand 2	E	80	82	anti-parallel
Strand 3	E	27	29	parallel
Strand 4	E	120	122	parallel
Strand 5	E	171	175	parallel
Strand 6	E	199	202	parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	217	220	first strand
Strand 2	E	206	211	anti-parallel
Strand 3	E	251	254	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	274	277	first strand
Strand 2	E	283	286	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	24	30	first strand
Strand 2	G	11	16	anti-parallel
Strand 3	G	108	111	anti-parallel
Strand 4	G	123	125	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	37	47	first strand
Strand 2	G	58	70	anti-parallel
Strand 3	G	151	152	anti-parallel
Strand 4	G	127	129	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	175	176	first strand
Strand 2	G	220	221	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	128	129	first strand
Strand 2	I	344	348	anti-parallel
Strand 3	I	160	163	anti-parallel
Strand 4	I	148	149	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	140	142	first strand
Strand 2	I	167	169	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	240	244	first strand
Strand 2	I	336	341	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	427	431	first strand
Strand 2	I	448	453	anti-parallel
Strand 3	I	491	493	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	569	570	first strand
Strand 2	I	497	502	anti-parallel
Strand 3	I	587	591	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	506	508	first strand
Strand 2	I	561	564	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	125	131	first strand
Strand 2	J	169	174	anti-parallel
Strand 3	J	208	210	parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	318	320	first strand
Strand 2	J	222	226	anti-parallel
Strand 3	J	362	363	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RAO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RAO