Analysis of interatomic Contacts of Structural Units in PDB entry:
6RAP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RAP entry

There are 5 chains in PDB entry 6RAP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 2	ALA 149
A	MET 1	ALA 149
C	THR 4	ILE 352
D	VAL 4	MET 449
E	SER 4	ILE 295

There are 37 helices in PDB entry 6RAP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	7	12	Right-handed alpha
Helix 2	AA2	B	77	82	Right-handed alpha
Helix 3	AA3	A	77	82	Right-handed alpha
Helix 4	AA4	C	51	59	Right-handed alpha
Helix 5	AA5	C	67	76	Right-handed alpha
Helix 6	AA6	C	89	98	Right-handed alpha
Helix 7	AA7	C	111	122	Right-handed alpha
Helix 8	AA8	C	142	146	Right-handed 310
Helix 9	AA9	C	172	177	Right-handed alpha
Helix 10	AB1	C	178	186	Right-handed alpha
Helix 11	AB2	C	209	214	Right-handed alpha
Helix 12	AB3	C	249	263	Right-handed alpha
Helix 13	AB4	C	267	271	Right-handed 310
Helix 14	AB5	C	276	297	Right-handed alpha
Helix 15	AB6	C	304	308	Right-handed alpha
Helix 16	AB7	C	320	325	Right-handed alpha
Helix 17	AB8	D	52	60	Right-handed alpha
Helix 18	AB9	D	110	121	Right-handed alpha
Helix 19	AC1	D	136	142	Right-handed alpha
Helix 20	AC2	D	142	150	Right-handed alpha
Helix 21	AC3	D	162	173	Right-handed alpha
Helix 22	AC4	D	174	177	Right-handed 310
Helix 23	AC5	D	270	285	Right-handed alpha
Helix 24	AC6	D	307	312	Right-handed alpha
Helix 25	AC7	D	346	365	Right-handed alpha
Helix 26	AC8	D	366	368	Right-handed 310
Helix 27	AC9	D	373	393	Right-handed alpha
Helix 28	AD1	D	417	423	Right-handed alpha
Helix 29	AD2	E	9	22	Right-handed alpha
Helix 30	AD3	E	56	60	Right-handed 310
Helix 31	AD4	E	113	124	Right-handed alpha
Helix 32	AD5	E	143	154	Right-handed alpha
Helix 33	AD6	E	196	209	Right-handed alpha
Helix 34	AD7	E	210	212	Right-handed 310
Helix 35	AD8	E	218	222	Right-handed alpha
Helix 36	AD9	E	223	225	Right-handed 310
Helix 37	AE1	E	256	269	Right-handed alpha

There are 18 sheets in PDB entry 6RAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	106	121	anti-parallel
Strand 5	B	134	140	anti-parallel
Strand 6	B	63	69	anti-parallel
Strand 7	B	32	34	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	26	27	first strand
Strand 2	B	19	23	anti-parallel
Strand 3	B	92	99	anti-parallel
Strand 4	B	106	121	anti-parallel
Strand 5	B	144	148	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	46	first strand
Strand 2	B	52	56	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	92	99	anti-parallel
Strand 3	A	106	120	anti-parallel
Strand 4	A	134	140	anti-parallel
Strand 5	A	63	69	anti-parallel
Strand 6	A	32	34	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	22	first strand
Strand 2	A	92	99	anti-parallel
Strand 3	A	106	120	anti-parallel
Strand 4	A	144	148	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	45	first strand
Strand 2	A	53	55	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	49	first strand
Strand 2	C	82	86	anti-parallel
Strand 3	C	31	34	parallel
Strand 4	C	103	105	parallel
Strand 5	C	128	129	parallel
Strand 6	C	156	157	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	224	226	first strand
Strand 2	C	234	236	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	312	first strand
Strand 2	C	329	335	anti-parallel
Strand 3	E	185	191	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	341	first strand
Strand 2	D	370	371	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	343	349	first strand
Strand 2	D	425	432	parallel
Strand 3	D	406	409	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	31	34	first strand
Strand 2	D	127	130	parallel
Strand 3	D	48	49	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	188	first strand
Strand 2	D	204	207	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	266	268	first strand
Strand 2	D	211	213	anti-parallel
Strand 3	D	301	302	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	322	325	first strand
Strand 2	D	329	332	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	85	87	anti-parallel
Strand 3	E	162	170	anti-parallel
Strand 4	E	79	82	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	48	50	first strand
Strand 2	E	85	87	anti-parallel
Strand 3	E	162	170	anti-parallel
Strand 4	E	134	136	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	228	232	first strand
Strand 2	E	243	247	anti-parallel
Strand 3	E	283	284	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RAP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RAP