Analysis of interatomic Contacts of Structural Units in PDB entry:
6RBE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RBE entry

There are 33 chains in PDB entry 6RBE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
2	U 1	U 1798
A	SER 2	PRO 207
B	THR 107	LYS 219
C	GLY 34	GLN 250
E	ALA 2	LEU 261
G	MET 1	ILE 226
H	PRO 4	SER 187
I	GLY 2	LYS 200
J	PRO 2	GLU 186
L	SER 2	PHE 156
N	GLY 2	ASN 151
O	PRO 120	LEU 137
R	GLY 2	ALA 126
V	MET 1	ARG 87
W	THR 2	TYR 130
X	GLY 2	SER 145
Y	SER 2	ASP 135
b	VAL 2	LYS 82
d	GLU 4	ARG 56
e	ALA 2	SER 61
D	ALA 3	TYR 225
F	PHE 20	ARG 225
K	MET 1	ASN 96
M	ALA 20	GLN 143
P	LYS 8	ALA 131
Q	ALA 3	ARG 143
S	SER 2	ALA 146
T	PRO 2	GLU 144
U	GLN 15	ASN 121
Z	ALA 36	THR 105
c	THR 5	ARG 67
f	VAL 102	ALA 152
g	ALA 2	ASN 319

There are141 helices in PDB entry 6RBE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	20	Right-handed alpha
Helix 2	AA2	A	49	65	Right-handed alpha
Helix 3	AA3	A	69	71	Right-handed 310
Helix 4	AA4	A	79	81	Right-handed 310
Helix 5	AA5	A	82	93	Right-handed alpha
Helix 6	AA6	A	129	138	Right-handed alpha
Helix 7	AA7	A	168	184	Right-handed alpha
Helix 8	AA8	B	108	114	Right-handed alpha
Helix 9	AA9	B	159	176	Right-handed alpha
Helix 10	AB1	B	180	189	Right-handed alpha
Helix 11	AB2	B	191	202	Right-handed alpha
Helix 12	AB3	C	40	47	Right-handed alpha
Helix 13	AB4	C	52	59	Right-handed alpha
Helix 14	AB5	C	65	73	Right-handed alpha
Helix 15	AB6	C	120	135	Right-handed alpha
Helix 16	AB7	C	181	191	Right-handed alpha
Helix 17	AB8	C	206	220	Right-handed alpha
Helix 18	AB9	C	221	223	Right-handed 310
Helix 19	AC1	C	226	230	Right-handed 310
Helix 20	AC2	C	238	243	Right-handed alpha
Helix 21	AC3	E	15	19	Right-handed 310
Helix 22	AC4	E	43	50	Right-handed alpha
Helix 23	AC5	E	58	66	Right-handed alpha
Helix 24	AC6	E	117	121	Right-handed 310
Helix 25	AC7	E	133	135	Right-handed 310
Helix 26	AC8	E	247	256	Right-handed alpha
Helix 27	AC9	G	20	25	Right-handed alpha
Helix 28	AD1	G	26	28	Right-handed 310
Helix 29	AD2	G	59	61	Right-handed 310
Helix 30	AD3	G	137	146	Right-handed alpha
Helix 31	AD4	G	152	157	Right-handed 310
Helix 32	AD5	G	180	226	Right-handed alpha
Helix 33	AD6	H	14	29	Right-handed alpha
Helix 34	AD7	H	30	35	Right-handed alpha
Helix 35	AD8	H	66	85	Right-handed alpha
Helix 36	AD9	H	117	130	Right-handed alpha
Helix 37	AE1	H	159	164	Right-handed alpha
Helix 38	AE2	H	165	178	Right-handed alpha
Helix 39	AE3	I	87	93	Right-handed alpha
Helix 40	AE4	I	106	117	Right-handed alpha
Helix 41	AE5	I	136	146	Right-handed alpha
Helix 42	AE6	I	153	163	Right-handed alpha
Helix 43	AE7	I	172	177	Right-handed alpha
Helix 44	AE8	I	186	198	Right-handed alpha
Helix 45	AE9	J	20	35	Right-handed alpha
Helix 46	AF1	J	39	61	Right-handed alpha
Helix 47	AF2	J	66	83	Right-handed alpha
Helix 48	AF3	J	100	106	Right-handed alpha
Helix 49	AF4	J	108	116	Right-handed alpha
Helix 50	AF5	J	121	131	Right-handed alpha
Helix 51	AF6	J	170	184	Right-handed alpha
Helix 52	AF7	L	45	51	Right-handed alpha
Helix 53	AF8	N	29	44	Right-handed alpha
Helix 54	AF9	N	46	57	Right-handed alpha
Helix 55	AG1	N	62	67	Right-handed alpha
Helix 56	AG2	N	70	78	Right-handed alpha
Helix 57	AG3	N	85	105	Right-handed alpha
Helix 58	AG4	N	108	132	Right-handed alpha
Helix 59	AG5	N	142	150	Right-handed alpha
Helix 60	AG6	R	6	21	Right-handed alpha
Helix 61	AG7	R	27	39	Right-handed alpha
Helix 62	AG8	R	43	62	Right-handed alpha
Helix 63	AG9	R	72	79	Right-handed alpha
Helix 64	AH1	R	103	114	Right-handed alpha
Helix 65	AH2	V	56	63	Right-handed alpha
Helix 66	AH3	V	64	75	Right-handed alpha
Helix 67	AH4	W	6	20	Right-handed alpha
Helix 68	AH5	W	31	45	Right-handed alpha
Helix 69	AH6	W	82	84	Right-handed 310
Helix 70	AH7	W	85	93	Right-handed alpha
Helix 71	AH8	W	113	119	Right-handed alpha
Helix 72	AH9	X	11	24	Right-handed alpha
Helix 73	AI1	X	27	35	Right-handed alpha
Helix 74	AI2	X	35	40	Right-handed alpha
Helix 75	AI3	X	131	138	Right-handed alpha
Helix 76	AI4	Y	16	18	Right-handed 310
Helix 77	AI5	Y	37	46	Right-handed alpha
Helix 78	AI6	Y	51	53	Right-handed 310
Helix 79	AI7	Y	78	86	Right-handed alpha
Helix 80	AI8	Y	87	95	Right-handed alpha
Helix 81	AI9	Y	104	116	Right-handed alpha
Helix 82	AJ1	Y	122	133	Right-handed alpha
Helix 83	AJ2	b	11	18	Right-handed alpha
Helix 84	AJ3	d	15	19	Right-handed 310
Helix 85	AJ4	d	32	36	Right-handed 310
Helix 86	AJ5	d	39	47	Right-handed alpha
Helix 87	AJ6	e	12	17	Right-handed alpha
Helix 88	AJ7	e	32	45	Right-handed alpha
Helix 89	AJ8	D	6	29	Right-handed alpha
Helix 90	AJ9	D	30	32	Right-handed 310
Helix 91	AK1	D	55	60	Right-handed alpha
Helix 92	AK2	D	65	78	Right-handed alpha
Helix 93	AK3	D	93	96	Right-handed 310
Helix 94	AK4	D	97	111	Right-handed alpha
Helix 95	AK5	D	116	129	Right-handed alpha
Helix 96	AK6	D	160	167	Right-handed alpha
Helix 97	AK7	D	191	195	Right-handed 310
Helix 98	AK8	F	30	40	Right-handed alpha
Helix 99	AK9	F	88	98	Right-handed alpha
Helix 100	AL1	F	106	124	Right-handed alpha
Helix 101	AL2	F	129	140	Right-handed alpha
Helix 102	AL3	F	163	184	Right-handed alpha
Helix 103	AL4	F	189	203	Right-handed alpha
Helix 104	AL5	F	208	224	Right-handed alpha
Helix 105	AL6	K	4	19	Right-handed alpha
Helix 106	AL7	K	38	51	Right-handed alpha
Helix 107	AL8	K	69	80	Right-handed alpha
Helix 108	AL9	M	26	38	Right-handed alpha
Helix 109	AM1	M	44	53	Right-handed alpha
Helix 110	AM2	M	69	81	Right-handed alpha
Helix 111	AM3	M	93	101	Right-handed alpha
Helix 112	AM4	M	131	142	Right-handed alpha
Helix 113	AM5	P	22	27	Right-handed alpha
Helix 114	AM6	P	30	37	Right-handed alpha
Helix 115	AM7	P	38	47	Right-handed alpha
Helix 116	AM8	P	53	66	Right-handed alpha
Helix 117	AM9	P	86	90	Right-handed 310
Helix 118	AN1	P	108	112	Right-handed 310
Helix 119	AN2	P	115	120	Right-handed 310
Helix 120	AN3	Q	37	39	Right-handed 310
Helix 121	AN4	Q	44	50	Right-handed alpha
Helix 122	AN5	Q	51	54	Right-handed 310
Helix 123	AN6	Q	73	96	Right-handed alpha
Helix 124	AN7	Q	98	111	Right-handed alpha
Helix 125	AN8	S	27	32	Right-handed alpha
Helix 126	AN9	S	33	35	Right-handed 310
Helix 127	AO1	S	39	50	Right-handed alpha
Helix 128	AO2	S	62	74	Right-handed alpha
Helix 129	AO3	S	76	80	Right-handed 310
Helix 130	AO4	S	104	120	Right-handed alpha
Helix 131	AO5	S	121	129	Right-handed alpha
Helix 132	AO6	T	10	26	Right-handed alpha
Helix 133	AO7	T	53	67	Right-handed alpha
Helix 134	AO8	T	72	81	Right-handed alpha
Helix 135	AO9	T	97	111	Right-handed alpha
Helix 136	AP1	T	125	142	Right-handed alpha
Helix 137	AP2	U	30	48	Right-handed alpha
Helix 138	AP3	U	96	106	Right-handed alpha
Helix 139	AP4	Z	44	52	Right-handed alpha
Helix 140	AP5	Z	61	67	Right-handed alpha
Helix 141	AP6	Z	75	85	Right-handed alpha

There are 47 sheets in PDB entry 6RBE. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, AA, AB, AC, AD, AE, AF, AG, AH, AI, AJ, AK, AL, AM, AN, AO, AP, AQ, AR, AS, AT, AU,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	96	99	first strand
Strand 2	A	73	77	parallel
Strand 3	A	120	123	parallel
Strand 4	A	143	147	parallel
Strand 5	A	159	161	parallel

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There are 2 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	124	128	first strand
Strand 2	B	134	138	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	118	first strand
Strand 2	C	95	105	anti-parallel
Strand 3	C	77	88	anti-parallel

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There are 3 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	162	first strand
Strand 2	C	165	171	anti-parallel
Strand 3	C	196	201	anti-parallel

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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	70	72	first strand
Strand 2	E	89	92	anti-parallel
Strand 3	E	97	100	anti-parallel

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There are 3 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	128	132	first strand
Strand 2	E	136	140	anti-parallel
Strand 3	E	146	148	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	197	199	first strand
Strand 2	E	207	211	anti-parallel
Strand 3	E	217	221	anti-parallel

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There are 2 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	159	162	first strand
Strand 2	E	169	173	anti-parallel

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There are 2 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	179	183	first strand
Strand 2	E	225	230	anti-parallel

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There are 5 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	12	17	first strand
Strand 2	G	2	7	anti-parallel
Strand 3	G	108	115	parallel
Strand 4	G	49	52	anti-parallel
Strand 5	G	35	37	anti-parallel

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There are 2 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	72	77	first strand
Strand 2	G	93	98	anti-parallel

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There are 2 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	160	163	first strand
Strand 2	G	168	171	anti-parallel

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There are 2 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	54	57	first strand
Strand 2	G	106	110	anti-parallel

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There are 3 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	45	50	first strand
Strand 2	H	56	62	anti-parallel
Strand 3	H	88	94	parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	180	185	first strand
Strand 2	H	148	154	parallel
Strand 3	H	135	142	anti-parallel

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There are 2 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	42	47	first strand
Strand 2	I	53	58	anti-parallel

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There are 2 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	63	67	first strand
Strand 2	I	72	76	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	167	169	first strand
Strand 2	I	181	183	anti-parallel

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There are 2 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	80	83	first strand
Strand 2	I	101	103	anti-parallel

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There are 5 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	99	110	first strand
Strand 2	L	83	94	anti-parallel
Strand 3	L	70	77	anti-parallel
Strand 4	L	122	127	anti-parallel
Strand 5	L	137	142	anti-parallel

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There are 2 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	32	37	first strand
Strand 2	V	50	55	anti-parallel

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There are 3 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	24	27	first strand
Strand 2	W	60	64	anti-parallel
Strand 3	W	50	53	anti-parallel

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There are 4 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	72	74	first strand
Strand 2	W	123	129	anti-parallel
Strand 3	W	101	106	anti-parallel
Strand 4	W	109	112	anti-parallel

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There are 5 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	82	85	first strand
Strand 2	X	72	76	anti-parallel
Strand 3	X	49	56	anti-parallel
Strand 4	X	101	105	anti-parallel
Strand 5	X	123	127	anti-parallel

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There are 4 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	7	10	first strand
Strand 2	Y	20	28	anti-parallel
Strand 3	Y	68	76	anti-parallel
Strand 4	Y	55	58	anti-parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	13	15	first strand
Strand 2	Y	20	22	anti-parallel

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There are 3 strands in AA sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	44	47	first strand
Strand 2	b	32	36	anti-parallel
Strand 3	b	78	81	anti-parallel

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There are 3 strands in AB sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	85	90	first strand
Strand 2	D	46	52	parallel
Strand 3	D	34	41	anti-parallel

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There are 4 strands in AC sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	148	155	first strand
Strand 2	D	133	140	anti-parallel
Strand 3	D	181	189	anti-parallel
Strand 4	D	168	176	anti-parallel

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There are 2 strands in AD sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	145	147	first strand
Strand 2	F	158	160	anti-parallel

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There are 2 strands in AE sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	55	57	first strand
Strand 2	K	66	68	anti-parallel

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There are 3 strands in AF sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	41	43	first strand
Strand 2	M	120	124	anti-parallel
Strand 3	M	57	62	anti-parallel

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There are 3 strands in AG sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	76	78	first strand
Strand 2	P	93	96	parallel
Strand 3	P	103	106	anti-parallel

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There are 4 strands in AH sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	7	12	first strand
Strand 2	Q	17	23	anti-parallel
Strand 3	Q	64	70	anti-parallel
Strand 4	Q	29	31	parallel

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There are 2 strands in AI sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	15	17	first strand
Strand 2	S	20	22	anti-parallel

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There are 2 strands in AJ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	114	116	first strand
Strand 2	T	122	124	anti-parallel

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There are 4 strands in AK sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	113	117	first strand
Strand 2	U	22	28	anti-parallel
Strand 3	U	87	93	anti-parallel
Strand 4	U	56	58	anti-parallel

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There are 2 strands in AL sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	61	67	first strand
Strand 2	U	80	86	anti-parallel

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There are 2 strands in AM sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	89	91	first strand
Strand 2	Z	101	103	anti-parallel

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There are 4 strands in AN sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	53	56	first strand
Strand 2	c	8	15	anti-parallel
Strand 3	c	27	32	anti-parallel
Strand 4	c	39	43	anti-parallel

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There are 4 strands in AO sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	20	25	first strand
Strand 2	g	32	37	anti-parallel
Strand 3	g	42	46	anti-parallel
Strand 4	g	56	60	anti-parallel

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There are 4 strands in AP sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	101	104	first strand
Strand 2	g	88	93	anti-parallel
Strand 3	g	79	84	anti-parallel
Strand 4	g	68	73	anti-parallel

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There are 3 strands in AQ sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	122	125	first strand
Strand 2	g	131	134	anti-parallel
Strand 3	g	140	144	anti-parallel

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There are 4 strands in AR sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	151	156	first strand
Strand 2	g	168	173	anti-parallel
Strand 3	g	177	182	anti-parallel
Strand 4	g	187	193	anti-parallel

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There are 4 strands in AS sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	201	204	first strand
Strand 2	g	210	214	anti-parallel
Strand 3	g	219	224	anti-parallel
Strand 4	g	229	235	anti-parallel

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There are 4 strands in AT sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	243	245	first strand
Strand 2	g	251	255	anti-parallel
Strand 3	g	260	264	anti-parallel
Strand 4	g	269	274	anti-parallel

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There are 4 strands in AU sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	g	5	13	first strand
Strand 2	g	310	317	anti-parallel
Strand 3	g	300	305	anti-parallel
Strand 4	g	289	294	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RBE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RBE