Analysis of interatomic Contacts of Structural Units in PDB entry:
6RC8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RC8 entry

There are 2 chains in PDB entry 6RC8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 4ASP 351
B
 VAL 4ASP 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 22 helices in PDB entry 6RC8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
51 59Right-handed alpha
Helix 2
AA2
A
67 77Right-handed alpha
Helix 3
AA3
A
89 98Right-handed alpha
Helix 4
AA4
A
111 122Right-handed alpha
Helix 5
AA5
A
172 189Right-handed alpha
Helix 6
AA6
A
249 259Right-handed alpha
Helix 7
AA7
A
262 267Right-handed alpha
Helix 8
AA8
A
268 270Right-handed 310
Helix 9
AA9
A
276 296Right-handed alpha
Helix 10
AB1
A
320 326Right-handed alpha
Helix 11
AB2
B
40 44Right-handed 310
Helix 12
AB3
B
53 60Right-handed alpha
Helix 13
AB4
B
110 122Right-handed alpha
Helix 14
AB5
B
136 142Right-handed alpha
Helix 15
AB6
B
143 148Right-handed alpha
Helix 16
AB7
B
162 171Right-handed alpha
Helix 17
AB8
B
173 178Right-handed 310
Helix 18
AB9
B
277 285Right-handed alpha
Helix 19
AC1
B
307 315Right-handed alpha
Helix 20
AC2
B
346 364Right-handed alpha
Helix 21
AC3
B
373 393Right-handed alpha
Helix 22
AC4
B
417 421Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 6RC8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 49first strand
Strand 2
A
82 85anti-parallel
Strand 3
A
30 33parallel
Strand 4
A
102 104parallel
Strand 5
A
127 129parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
225 226first strand
Strand 2
A
234 235anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
309 312first strand
Strand 2
A
332 335anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
343 350first strand
Strand 2
B
425 432parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 50first strand
Strand 2
B
126 128anti-parallel
Strand 3
B
31 32parallel
Strand 4
B
155 157parallel
Strand 5
B
184 185parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 188first strand
Strand 2
B
206 207parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 213first strand
Strand 2
B
266 268anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
321 325first strand
Strand 2
B
329 333anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il