Analysis of interatomic Contacts of Structural Units in PDB entry:
6RC9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RC9 entry

There is 1 chain in PDB entry 6RC9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 60	LYS 1454

There are 54 helices in PDB entry 6RC9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	112	124	Right-handed alpha
Helix 2	AA2	A	204	210	Right-handed alpha
Helix 3	AA3	A	211	214	Right-handed 310
Helix 4	AA4	A	248	254	Right-handed 310
Helix 5	AA5	A	328	333	Right-handed 310
Helix 6	AA6	A	358	364	Right-handed alpha
Helix 7	AA7	A	365	370	Right-handed alpha
Helix 8	AA8	A	395	401	Right-handed alpha
Helix 9	AA9	A	402	403	Right-handed 310
Helix 10	AB1	A	404	409	Right-handed 310
Helix 11	AB2	A	416	426	Right-handed alpha
Helix 12	AB3	A	438	442	Right-handed 310
Helix 13	AB4	A	444	449	Right-handed 310
Helix 14	AB5	A	462	466	Right-handed 310
Helix 15	AB6	A	483	490	Right-handed alpha
Helix 16	AB7	A	542	546	Right-handed alpha
Helix 17	AB8	A	550	554	Right-handed 310
Helix 18	AB9	A	607	610	Right-handed 310
Helix 19	AC1	A	611	619	Right-handed alpha
Helix 20	AC2	A	641	645	Right-handed 310
Helix 21	AC3	A	662	666	Right-handed 310
Helix 22	AC4	A	670	678	Right-handed alpha
Helix 23	AC5	A	678	683	Right-handed alpha
Helix 24	AC6	A	701	710	Right-handed alpha
Helix 25	AC7	A	739	746	Right-handed alpha
Helix 26	AC8	A	753	757	Right-handed 310
Helix 27	AC9	A	761	767	Right-handed alpha
Helix 28	AD1	A	779	785	Right-handed 310
Helix 29	AD2	A	797	808	Right-handed alpha
Helix 30	AD3	A	822	826	Right-handed 310
Helix 31	AD4	A	915	920	Right-handed alpha
Helix 32	AD5	A	981	985	Right-handed 310
Helix 33	AD6	A	988	1002	Right-handed alpha
Helix 34	AD7	A	1019	1023	Right-handed 310
Helix 35	AD8	A	1026	1033	Right-handed alpha
Helix 36	AD9	A	1034	1038	Right-handed 310
Helix 37	AE1	A	1049	1059	Right-handed alpha
Helix 38	AE2	A	1059	1064	Right-handed alpha
Helix 39	AE3	A	1146	1154	Right-handed alpha
Helix 40	AE4	A	1158	1160	Right-handed 310
Helix 41	AE5	A	1179	1187	Right-handed alpha
Helix 42	AE6	A	1195	1201	Right-handed alpha
Helix 43	AE7	A	1220	1223	Right-handed 310
Helix 44	AE8	A	1249	1253	Right-handed 310
Helix 45	AE9	A	1255	1260	Right-handed alpha
Helix 46	AF1	A	1263	1276	Right-handed alpha
Helix 47	AF2	A	1302	1307	Right-handed alpha
Helix 48	AF3	A	1326	1337	Right-handed alpha
Helix 49	AF4	A	1370	1372	Right-handed 310
Helix 50	AF5	A	1411	1415	Right-handed 310
Helix 51	AF6	A	1416	1421	Right-handed alpha
Helix 52	AF7	A	1424	1427	Right-handed 310
Helix 53	AF8	A	1440	1444	Right-handed alpha
Helix 54	AF9	A	1452	1454	Right-handed 310

There are 19 sheets in PDB entry 6RC9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	87	93	anti-parallel
Strand 3	A	78	81	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	67	68	first strand
Strand 2	A	87	93	anti-parallel
Strand 3	A	126	131	anti-parallel
Strand 4	A	137	141	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	162	first strand
Strand 2	A	166	167	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	184	190	first strand
Strand 2	A	197	203	anti-parallel
Strand 3	A	372	378	anti-parallel
Strand 4	A	386	393	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	246	first strand
Strand 2	A	315	316	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	287	292	anti-parallel
Strand 3	A	690	693	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	319	320	first strand
Strand 2	A	323	324	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	497	first strand
Strand 2	A	500	503	anti-parallel
Strand 3	A	522	528	anti-parallel
Strand 4	A	535	541	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	574	582	first strand
Strand 2	A	585	592	anti-parallel
Strand 3	A	732	738	anti-parallel
Strand 4	A	787	791	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	862	865	first strand
Strand 2	A	890	893	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	913	914	first strand
Strand 2	A	967	968	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1006	1008	first strand
Strand 2	A	1086	1092	anti-parallel
Strand 3	A	1215	1218	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1107	1109	first strand
Strand 2	A	1112	1117	anti-parallel
Strand 3	A	1120	1124	anti-parallel
Strand 4	A	1137	1141	anti-parallel
Strand 5	A	1366	1368	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1162	1167	first strand
Strand 2	A	1173	1178	anti-parallel
Strand 3	A	1287	1291	anti-parallel
Strand 4	A	1374	1377	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1384	1386	first strand
Strand 2	A	1391	1393	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1408	1409	first strand
Strand 2	A	1445	1446	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1429	1430	first strand
Strand 2	A	1435	1436	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1456	1464	first strand
Strand 2	A	1469	1477	anti-parallel
Strand 3	A	1498	1500	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1456	1464	first strand
Strand 2	A	1469	1477	anti-parallel
Strand 3	A	1510	1513	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RC9

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RC9