Analysis of interatomic Contacts of Structural Units in PDB entry:
6RCK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RCK entry

There are 3 chains in PDB entry 6RCK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 0PHE 346
B
 GLY 0PHE 346
C
 GLY 0PHE 346
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 6RCK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
98 103Right-handed alpha
Helix 2
AA2
A
104 106Right-handed 310
Helix 3
AA3
A
137 142Right-handed alpha
Helix 4
AA4
A
170 174Right-handed 310
Helix 5
AA5
A
248 250Right-handed 310
Helix 6
AA6
A
324 331Right-handed alpha
Helix 7
AA7
B
98 103Right-handed alpha
Helix 8
AA8
B
104 106Right-handed 310
Helix 9
AA9
B
137 143Right-handed alpha
Helix 10
AB1
B
170 174Right-handed 310
Helix 11
AB2
B
203 208Right-handed 310
Helix 12
AB3
B
248 250Right-handed 310
Helix 13
AB4
B
324 331Right-handed alpha
Helix 14
AB5
C
84 86Right-handed 310
Helix 15
AB6
C
98 103Right-handed alpha
Helix 16
AB7
C
104 106Right-handed 310
Helix 17
AB8
C
170 174Right-handed 310
Helix 18
AB9
C
203 209Right-handed alpha
Helix 19
AC1
C
248 250Right-handed 310
Helix 20
AC2
C
324 331Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6RCK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1 6first strand
Strand 2
A
31 32first strand
Strand 3
A
35 45first strand
Strand 4
A
50 61anti-parallel
Strand 5
A
72 83anti-parallel
Strand 6
A
87 95anti-parallel
Strand 7
A
127 136anti-parallel
Strand 8
A
146 153anti-parallel
Strand 9
A
178 185anti-parallel
Strand 10
A
191 201anti-parallel
Strand 11
A
217 229anti-parallel
Strand 12
A
232 246anti-parallel
Strand 13
A
252 265anti-parallel
Strand 14
A
271 285anti-parallel
Strand 15
A
290 307anti-parallel
Strand 16
A
310 319anti-parallel
Strand 17
A
337 346anti-parallel
Strand 18
A
9 24anti-parallel
Strand 19
A
31 32anti-parallel
Back to list of sheets
Back to top of page

There are 19 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1 6first strand
Strand 2
B
31 32first strand
Strand 3
B
35 47first strand
Strand 4
B
50 61anti-parallel
Strand 5
B
72 83anti-parallel
Strand 6
B
87 95anti-parallel
Strand 7
B
127 136anti-parallel
Strand 8
B
146 153anti-parallel
Strand 9
B
178 186anti-parallel
Strand 10
B
191 201anti-parallel
Strand 11
B
217 229anti-parallel
Strand 12
B
232 246anti-parallel
Strand 13
B
252 265anti-parallel
Strand 14
B
271 285anti-parallel
Strand 15
B
290 307anti-parallel
Strand 16
B
310 319anti-parallel
Strand 17
B
337 346anti-parallel
Strand 18
B
9 23anti-parallel
Strand 19
B
31 32anti-parallel
Back to list of sheets
Back to top of page

There are 19 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1 6first strand
Strand 2
C
31 32first strand
Strand 3
C
35 47first strand
Strand 4
C
50 61anti-parallel
Strand 5
C
72 82anti-parallel
Strand 6
C
88 95anti-parallel
Strand 7
C
127 136anti-parallel
Strand 8
C
146 153anti-parallel
Strand 9
C
178 186anti-parallel
Strand 10
C
192 201anti-parallel
Strand 11
C
217 229anti-parallel
Strand 12
C
232 246anti-parallel
Strand 13
C
252 265anti-parallel
Strand 14
C
271 285anti-parallel
Strand 15
C
290 305anti-parallel
Strand 16
C
310 319anti-parallel
Strand 17
C
337 346anti-parallel
Strand 18
C
9 24anti-parallel
Strand 19
C
31 32anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il