Analysis of interatomic Contacts of Structural Units in PDB entry:
6RCV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RCV entry

There are 6 chains in PDB entry 6RCV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 144	VAL 500
B	TYR 2	GLU 212
C	GLU 1	CYS 231
D	ILE 2	ARG 211
E	GLN 1	CYS 232
F	PHE 144	HIS 240

There are 55 helices in PDB entry 6RCV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	176	196	Right-handed alpha
Helix 2	AA2	A	197	201	Right-handed 310
Helix 3	AA3	A	202	222	Right-handed alpha
Helix 4	AA4	A	224	240	Right-handed alpha
Helix 5	AA5	A	300	321	Right-handed alpha
Helix 6	AA6	A	321	342	Right-handed alpha
Helix 7	AA7	A	353	364	Right-handed alpha
Helix 8	AA8	A	364	374	Right-handed alpha
Helix 9	AA9	A	375	398	Right-handed alpha
Helix 10	AB1	A	403	446	Right-handed alpha
Helix 11	AB2	A	451	496	Right-handed alpha
Helix 12	AB3	B	26	30	Right-handed 310
Helix 13	AB4	B	78	82	Right-handed 310
Helix 14	AB5	B	123	129	Right-handed alpha
Helix 15	AB6	B	183	189	Right-handed alpha
Helix 16	AB7	C	28	32	Right-handed 310
Helix 17	AB8	C	74	76	Right-handed 310
Helix 18	AB9	C	87	91	Right-handed 310
Helix 19	AC1	C	171	173	Right-handed 310
Helix 20	AC2	C	216	219	Right-handed 310
Helix 21	AC3	D	79	83	Right-handed 310
Helix 22	AC4	D	121	127	Right-handed alpha
Helix 23	AC5	D	183	187	Right-handed alpha
Helix 24	AC6	E	28	31	Right-handed 310
Helix 25	AC7	E	87	91	Right-handed 310
Helix 26	AC8	E	203	207	Right-handed 310
Helix 27	AC9	E	217	220	Right-handed 310
Helix 28	AD1	F	176	196	Right-handed alpha
Helix 29	AD2	F	197	201	Right-handed 310
Helix 30	AD3	F	202	222	Right-handed alpha
Helix 31	AD4	F	224	240	Right-handed alpha
Helix 32	AD5	F	300	321	Right-handed alpha
Helix 33	AD6	F	321	342	Right-handed alpha
Helix 34	AD7	F	353	364	Right-handed alpha
Helix 35	AD8	F	364	374	Right-handed alpha
Helix 36	AD9	F	375	401	Right-handed alpha
Helix 37	AE1	F	403	446	Right-handed alpha
Helix 38	AE2	F	451	497	Right-handed alpha
Helix 39	AE3	G	26	30	Right-handed 310
Helix 40	AE4	G	78	82	Right-handed 310
Helix 41	AE5	G	123	129	Right-handed alpha
Helix 42	AE6	G	183	189	Right-handed alpha
Helix 43	AE7	H	28	32	Right-handed 310
Helix 44	AE8	H	74	76	Right-handed 310
Helix 45	AE9	H	87	91	Right-handed 310
Helix 46	AF1	H	171	173	Right-handed 310
Helix 47	AF2	H	202	207	Right-handed alpha
Helix 48	AF3	H	217	219	Right-handed 310
Helix 49	AF4	I	79	83	Right-handed 310
Helix 50	AF5	I	121	127	Right-handed alpha
Helix 51	AF6	I	183	187	Right-handed alpha
Helix 52	AF7	J	28	31	Right-handed 310
Helix 53	AF8	J	87	91	Right-handed 310
Helix 54	AF9	J	201	207	Right-handed 310
Helix 55	AG1	J	217	220	Right-handed 310

There are 48 sheets in PDB entry 6RCV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	164	first strand
Strand 2	A	172	175	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	103	107	parallel
Strand 3	B	83	91	anti-parallel
Strand 4	B	33	37	anti-parallel
Strand 5	B	44	47	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	9	12	first strand
Strand 2	B	103	107	parallel
Strand 3	B	83	91	anti-parallel
Strand 4	B	96	99	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	18	23	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	61	64	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	132	141	anti-parallel
Strand 3	B	174	182	anti-parallel
Strand 4	B	161	163	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	116	120	first strand
Strand 2	B	132	141	anti-parallel
Strand 3	B	174	182	anti-parallel
Strand 4	B	167	168	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	157	first strand
Strand 2	B	147	152	anti-parallel
Strand 3	B	193	199	anti-parallel
Strand 4	B	202	208	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	6	first strand
Strand 2	C	18	25	anti-parallel
Strand 3	C	78	83	anti-parallel
Strand 4	C	68	73	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	122	126	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	33	39	anti-parallel
Strand 5	C	46	51	anti-parallel
Strand 6	C	58	60	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	10	12	first strand
Strand 2	C	122	126	parallel
Strand 3	C	92	99	anti-parallel
Strand 4	C	117	118	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	139	first strand
Strand 2	C	151	160	anti-parallel
Strand 3	C	191	199	anti-parallel
Strand 4	C	178	180	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	139	first strand
Strand 2	C	151	160	anti-parallel
Strand 3	C	191	199	anti-parallel
Strand 4	C	184	185	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	169	first strand
Strand 2	C	210	215	anti-parallel
Strand 3	C	220	225	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	6	first strand
Strand 2	D	19	29	anti-parallel
Strand 3	D	62	75	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	33	38	anti-parallel
Strand 5	D	45	49	anti-parallel
Strand 6	D	53	54	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	13	first strand
Strand 2	D	102	106	parallel
Strand 3	D	85	90	anti-parallel
Strand 4	D	97	98	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	114	118	first strand
Strand 2	D	129	139	anti-parallel
Strand 3	D	173	182	anti-parallel
Strand 4	D	159	164	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	153	154	first strand
Strand 2	D	144	150	anti-parallel
Strand 3	D	191	198	anti-parallel
Strand 4	D	205	210	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	68	69	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	3	6	first strand
Strand 2	E	18	25	anti-parallel
Strand 3	E	78	83	anti-parallel
Strand 4	E	72	73	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	10	12	first strand
Strand 2	E	123	127	parallel
Strand 3	E	92	99	anti-parallel
Strand 4	E	33	39	anti-parallel
Strand 5	E	45	52	anti-parallel
Strand 6	E	58	60	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	140	first strand
Strand 2	E	151	161	anti-parallel
Strand 3	E	192	201	anti-parallel
Strand 4	E	179	181	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	136	140	first strand
Strand 2	E	151	161	anti-parallel
Strand 3	E	192	201	anti-parallel
Strand 4	E	185	186	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	167	169	first strand
Strand 2	E	211	216	anti-parallel
Strand 3	E	221	226	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	172	175	first strand
Strand 2	F	159	164	anti-parallel
Strand 3	H	103	105	parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	12	first strand
Strand 2	G	103	107	parallel
Strand 3	G	83	91	anti-parallel
Strand 4	G	33	37	anti-parallel
Strand 5	G	44	47	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	9	12	first strand
Strand 2	G	103	107	parallel
Strand 3	G	83	91	anti-parallel
Strand 4	G	96	99	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	18	23	first strand
Strand 2	G	69	74	anti-parallel
Strand 3	G	61	66	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	120	first strand
Strand 2	G	132	141	anti-parallel
Strand 3	G	174	182	anti-parallel
Strand 4	G	161	163	anti-parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	116	120	first strand
Strand 2	G	132	141	anti-parallel
Strand 3	G	174	182	anti-parallel
Strand 4	G	167	168	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	155	157	first strand
Strand 2	G	147	152	anti-parallel
Strand 3	G	193	199	anti-parallel
Strand 4	G	202	208	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	6	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	122	126	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	122	126	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	115	118	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	139	first strand
Strand 2	H	151	160	anti-parallel
Strand 3	H	191	199	anti-parallel
Strand 4	H	178	180	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	135	139	first strand
Strand 2	H	151	160	anti-parallel
Strand 3	H	191	199	anti-parallel
Strand 4	H	184	185	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	165	169	first strand
Strand 2	H	210	215	anti-parallel
Strand 3	H	220	225	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	6	first strand
Strand 2	I	19	25	anti-parallel
Strand 3	I	70	75	anti-parallel
Strand 4	I	62	66	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	32	38	anti-parallel
Strand 5	I	45	50	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	10	13	first strand
Strand 2	I	102	106	parallel
Strand 3	I	85	90	anti-parallel
Strand 4	I	97	98	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	114	118	first strand
Strand 2	I	129	139	anti-parallel
Strand 3	I	173	182	anti-parallel
Strand 4	I	159	164	anti-parallel

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There are 4 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	153	154	first strand
Strand 2	I	144	150	anti-parallel
Strand 3	I	191	198	anti-parallel
Strand 4	I	205	210	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	69	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	6	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	72	73	anti-parallel

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There are 6 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	10	12	first strand
Strand 2	J	123	127	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	33	39	anti-parallel
Strand 5	J	45	52	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	136	140	first strand
Strand 2	J	152	161	anti-parallel
Strand 3	J	192	200	anti-parallel
Strand 4	J	179	181	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	136	140	first strand
Strand 2	J	152	161	anti-parallel
Strand 3	J	192	200	anti-parallel
Strand 4	J	185	186	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	167	169	first strand
Strand 2	J	211	216	anti-parallel
Strand 3	J	221	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RCV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RCV