Analysis of interatomic Contacts of Structural Units in PDB entry:
6RD3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RD3 entry

There are 6 chains in PDB entry 6RD3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 0	PHE 344
B	GLY 0	PHE 344
C	GLY 0	PHE 344
D	GLY 0	PHE 344
E	GLY 0	PHE 344
F	GLY 0	PHE 344

There are 37 helices in PDB entry 6RD3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	98	103	Right-handed alpha
Helix 2	AA2	A	104	106	Right-handed 310
Helix 3	AA3	A	168	172	Right-handed 310
Helix 4	AA4	A	245	249	Right-handed 310
Helix 5	AA5	A	322	329	Right-handed alpha
Helix 6	AA6	B	98	103	Right-handed alpha
Helix 7	AA7	B	104	106	Right-handed 310
Helix 8	AA8	B	120	123	Right-handed 310
Helix 9	AA9	B	135	140	Right-handed alpha
Helix 10	AB1	B	168	172	Right-handed 310
Helix 11	AB2	B	202	206	Right-handed 310
Helix 12	AB3	B	245	249	Right-handed 310
Helix 13	AB4	B	322	328	Right-handed alpha
Helix 14	AB5	C	98	103	Right-handed alpha
Helix 15	AB6	C	104	106	Right-handed 310
Helix 16	AB7	C	135	140	Right-handed alpha
Helix 17	AB8	C	168	172	Right-handed 310
Helix 18	AB9	C	246	248	Right-handed 310
Helix 19	AC1	C	322	329	Right-handed alpha
Helix 20	AC2	D	98	103	Right-handed alpha
Helix 21	AC3	D	104	106	Right-handed 310
Helix 22	AC4	D	135	140	Right-handed alpha
Helix 23	AC5	D	168	172	Right-handed 310
Helix 24	AC6	D	201	206	Right-handed 310
Helix 25	AC7	D	245	249	Right-handed 310
Helix 26	AC8	D	322	329	Right-handed alpha
Helix 27	AC9	E	98	103	Right-handed alpha
Helix 28	AD1	E	104	106	Right-handed 310
Helix 29	AD2	E	168	172	Right-handed 310
Helix 30	AD3	E	245	249	Right-handed 310
Helix 31	AD4	E	322	329	Right-handed alpha
Helix 32	AD5	F	98	103	Right-handed alpha
Helix 33	AD6	F	104	106	Right-handed 310
Helix 34	AD7	F	136	140	Right-handed alpha
Helix 35	AD8	F	168	172	Right-handed 310
Helix 36	AD9	F	246	248	Right-handed 310
Helix 37	AE1	F	322	328	Right-handed alpha

There are 6 sheets in PDB entry 6RD3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 19 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1	6	first strand
Strand 2	A	31	32	first strand
Strand 3	A	35	45	first strand
Strand 4	A	50	61	anti-parallel
Strand 5	A	72	83	anti-parallel
Strand 6	A	88	95	anti-parallel
Strand 7	A	125	134	anti-parallel
Strand 8	A	144	151	anti-parallel
Strand 9	A	176	183	anti-parallel
Strand 10	A	190	199	anti-parallel
Strand 11	A	215	227	anti-parallel
Strand 12	A	230	240	anti-parallel
Strand 13	A	253	263	anti-parallel
Strand 14	A	269	283	anti-parallel
Strand 15	A	288	305	anti-parallel
Strand 16	A	308	317	anti-parallel
Strand 17	A	335	344	anti-parallel
Strand 18	A	9	24	anti-parallel
Strand 19	A	31	32	anti-parallel

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There are 19 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1	6	first strand
Strand 2	B	31	32	first strand
Strand 3	B	35	45	first strand
Strand 4	B	50	61	anti-parallel
Strand 5	B	72	83	anti-parallel
Strand 6	B	88	95	anti-parallel
Strand 7	B	125	134	anti-parallel
Strand 8	B	144	151	anti-parallel
Strand 9	B	176	184	anti-parallel
Strand 10	B	189	199	anti-parallel
Strand 11	B	215	227	anti-parallel
Strand 12	B	230	240	anti-parallel
Strand 13	B	253	263	anti-parallel
Strand 14	B	269	283	anti-parallel
Strand 15	B	288	305	anti-parallel
Strand 16	B	308	317	anti-parallel
Strand 17	B	335	344	anti-parallel
Strand 18	B	9	24	anti-parallel
Strand 19	B	31	32	anti-parallel

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There are 19 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1	6	first strand
Strand 2	C	31	32	first strand
Strand 3	C	35	45	first strand
Strand 4	C	50	61	anti-parallel
Strand 5	C	72	83	anti-parallel
Strand 6	C	88	95	anti-parallel
Strand 7	C	125	134	anti-parallel
Strand 8	C	144	151	anti-parallel
Strand 9	C	176	183	anti-parallel
Strand 10	C	189	199	anti-parallel
Strand 11	C	215	227	anti-parallel
Strand 12	C	230	244	anti-parallel
Strand 13	C	250	263	anti-parallel
Strand 14	C	269	283	anti-parallel
Strand 15	C	288	303	anti-parallel
Strand 16	C	308	317	anti-parallel
Strand 17	C	335	344	anti-parallel
Strand 18	C	9	24	anti-parallel
Strand 19	C	31	32	anti-parallel

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There are 19 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1	6	first strand
Strand 2	D	31	32	first strand
Strand 3	D	35	45	first strand
Strand 4	D	50	61	anti-parallel
Strand 5	D	72	83	anti-parallel
Strand 6	D	88	95	anti-parallel
Strand 7	D	125	134	anti-parallel
Strand 8	D	144	151	anti-parallel
Strand 9	D	176	186	anti-parallel
Strand 10	D	189	199	anti-parallel
Strand 11	D	215	227	anti-parallel
Strand 12	D	230	240	anti-parallel
Strand 13	D	253	263	anti-parallel
Strand 14	D	269	283	anti-parallel
Strand 15	D	288	305	anti-parallel
Strand 16	D	308	317	anti-parallel
Strand 17	D	335	344	anti-parallel
Strand 18	D	9	24	anti-parallel
Strand 19	D	31	32	anti-parallel

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There are 19 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	1	6	first strand
Strand 2	E	31	32	first strand
Strand 3	E	35	45	first strand
Strand 4	E	50	61	anti-parallel
Strand 5	E	72	83	anti-parallel
Strand 6	E	88	95	anti-parallel
Strand 7	E	125	134	anti-parallel
Strand 8	E	144	151	anti-parallel
Strand 9	E	176	184	anti-parallel
Strand 10	E	189	199	anti-parallel
Strand 11	E	215	227	anti-parallel
Strand 12	E	230	240	anti-parallel
Strand 13	E	253	263	anti-parallel
Strand 14	E	269	283	anti-parallel
Strand 15	E	288	305	anti-parallel
Strand 16	E	308	317	anti-parallel
Strand 17	E	335	344	anti-parallel
Strand 18	E	9	24	anti-parallel
Strand 19	E	31	32	anti-parallel

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There are 19 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	1	6	first strand
Strand 2	F	31	32	first strand
Strand 3	F	35	45	first strand
Strand 4	F	50	61	anti-parallel
Strand 5	F	72	83	anti-parallel
Strand 6	F	88	95	anti-parallel
Strand 7	F	125	135	anti-parallel
Strand 8	F	144	151	anti-parallel
Strand 9	F	176	184	anti-parallel
Strand 10	F	189	199	anti-parallel
Strand 11	F	215	227	anti-parallel
Strand 12	F	230	244	anti-parallel
Strand 13	F	250	263	anti-parallel
Strand 14	F	269	283	anti-parallel
Strand 15	F	288	305	anti-parallel
Strand 16	F	308	317	anti-parallel
Strand 17	F	335	344	anti-parallel
Strand 18	F	9	24	anti-parallel
Strand 19	F	31	32	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RD3

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RD3