Analysis of interatomic Contacts of Structural Units in PDB entry:
6RD6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RD6 entry

There are 5 chains in PDB entry 6RD6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
2
 GLU 5PHE 445
4
 ALA 4ALA 293
7
 LEU 15GLN 190
P
 HIS 148ILE 229
T
 ALA 40GLY 85
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 6RD6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
2
7 19Right-handed alpha
Helix 2
AA2
2
25 39Right-handed alpha
Helix 3
AA3
2
44 58Right-handed alpha
Helix 4
AA4
2
62 77Right-handed alpha
Helix 5
AA5
2
80 87Right-handed alpha
Helix 6
AA6
2
87 95Right-handed alpha
Helix 7
AA7
2
96 98Right-handed 310
Helix 8
AA8
2
99 113Right-handed alpha
Helix 9
AA9
2
117 131Right-handed alpha
Helix 10
AB1
2
136 150Right-handed alpha
Helix 11
AB2
2
154 168Right-handed alpha
Helix 12
AB3
2
171 186Right-handed alpha
Helix 13
AB4
2
189 199Right-handed alpha
Helix 14
AB5
2
206 220Right-handed alpha
Helix 15
AB6
2
225 235Right-handed alpha
Helix 16
AB7
2
236 239Right-handed 310
Helix 17
AB8
2
240 255Right-handed alpha
Helix 18
AB9
2
258 276Right-handed alpha
Helix 19
AC1
2
281 296Right-handed alpha
Helix 20
AC2
2
300 321Right-handed alpha
Helix 21
AC3
2
323 341Right-handed alpha
Helix 22
AC4
2
345 357Right-handed alpha
Helix 23
AC5
2
383 387Right-handed 310
Helix 24
AC6
2
396 409Right-handed alpha
Helix 25
AC7
2
418 423Right-handed alpha
Helix 26
AC8
2
426 442Right-handed alpha
Helix 27
AC9
4
7 14Right-handed alpha
Helix 28
AD1
4
18 35Right-handed alpha
Helix 29
AD2
4
46 67Right-handed alpha
Helix 30
AD3
4
78 95Right-handed alpha
Helix 31
AD4
4
99 112Right-handed alpha
Helix 32
AD5
4
117 125Right-handed alpha
Helix 33
AD6
4
130 149Right-handed alpha
Helix 34
AD7
4
158 175Right-handed alpha
Helix 35
AD8
4
178 188Right-handed alpha
Helix 36
AD9
4
191 234Right-handed alpha
Helix 37
AE1
4
236 258Right-handed alpha
Helix 38
AE2
4
261 284Right-handed alpha
Helix 39
AE3
7
63 70Right-handed alpha
Helix 40
AE4
7
83 106Right-handed alpha
Helix 41
AE5
7
109 114Right-handed 310
Helix 42
AE6
7
115 122Right-handed alpha
Helix 43
AE7
7
123 145Right-handed alpha
Helix 44
AE8
7
146 148Right-handed 310
Helix 45
AE9
7
149 155Right-handed alpha
Helix 46
AF1
7
157 166Right-handed alpha
Helix 47
AF2
7
174 188Right-handed alpha
Helix 48
AF3
P
163 175Right-handed alpha
Helix 49
AF4
P
210 229Right-handed alpha
Helix 50
AF5
T
44 49Right-handed alpha
Helix 51
AF6
T
55 76Right-handed alpha
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There are 5 sheets in PDB entry 6RD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
78 79first strand
Strand 2
7
74 75parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
358 359first strand
Strand 2
2
365 366anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
368 372first strand
Strand 2
2
375 382anti-parallel
Strand 3
2
412 417parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
36 41first strand
Strand 2
7
45 52anti-parallel
Strand 3
7
55 62anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
183 190first strand
Strand 2
P
151 158parallel
Strand 3
P
198 202anti-parallel
Strand 4
P
205 208anti-parallel
Strand 5
T
81 83anti-parallel
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