Analysis of interatomic Contacts of Structural Units in PDB entry:
6RD7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RD7 entry

There are 18 chains in PDB entry 6RD7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
0
 MET 1HIS 81
1
 TYR 23GLY 617
3
 PRO 77GLY 321
5
 MET 1PHE 123
6
 GLU 28LEU 151
8
 VAL 2HIS 89
9
 MET 1SER 96
A
 SER 54ALA 127
B
 SER 54ALA 127
C
 SER 54ALA 127
D
 SER 54ALA 127
E
 SER 54ALA 127
F
 SER 54ALA 127
G
 SER 54ALA 127
H
 SER 54ALA 127
I
 SER 54ALA 127
J
 SER 54ALA 127
M
 SER 95LYS 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are112 helices in PDB entry 6RD7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
0
3 10Right-handed alpha
Helix 2
AA2
0
17 31Right-handed alpha
Helix 3
AA3
0
43 50Right-handed alpha
Helix 4
AA4
0
51 56Right-handed alpha
Helix 5
AA5
0
57 61Right-handed 310
Helix 6
AA6
1
46 74Right-handed alpha
Helix 7
AA7
1
83 87Right-handed 310
Helix 8
AA8
1
106 143Right-handed alpha
Helix 9
AA9
1
163 177Right-handed alpha
Helix 10
AB1
1
190 205Right-handed alpha
Helix 11
AB2
1
209 224Right-handed alpha
Helix 12
AB3
1
241 271Right-handed alpha
Helix 13
AB4
1
272 277Right-handed 310
Helix 14
AB5
1
281 285Right-handed 310
Helix 15
AB6
1
289 293Right-handed 310
Helix 16
AB7
1
297 305Right-handed alpha
Helix 17
AB8
1
310 317Right-handed alpha
Helix 18
AB9
1
318 322Right-handed 310
Helix 19
AC1
1
323 327Right-handed 310
Helix 20
AC2
1
338 351Right-handed alpha
Helix 21
AC3
1
353 363Right-handed alpha
Helix 22
AC4
1
364 367Right-handed 310
Helix 23
AC5
1
375 388Right-handed alpha
Helix 24
AC6
1
392 421Right-handed alpha
Helix 25
AC7
1
425 432Right-handed alpha
Helix 26
AC8
1
435 446Right-handed alpha
Helix 27
AC9
1
446 461Right-handed alpha
Helix 28
AD1
1
463 479Right-handed alpha
Helix 29
AD2
1
480 483Right-handed 310
Helix 30
AD3
1
485 490Right-handed alpha
Helix 31
AD4
1
490 516Right-handed alpha
Helix 32
AD5
1
518 536Right-handed alpha
Helix 33
AD6
1
541 549Right-handed alpha
Helix 34
AD7
1
549 562Right-handed alpha
Helix 35
AD8
1
566 574Right-handed alpha
Helix 36
AD9
1
576 588Right-handed alpha
Helix 37
AE1
1
589 591Right-handed 310
Helix 38
AE2
1
592 606Right-handed alpha
Helix 39
AE3
1
610 614Right-handed 310
Helix 40
AE4
3
78 90Right-handed alpha
Helix 41
AE5
3
93 98Right-handed alpha
Helix 42
AE6
3
102 112Right-handed alpha
Helix 43
AE7
3
117 129Right-handed alpha
Helix 44
AE8
3
131 135Right-handed 310
Helix 45
AE9
3
136 151Right-handed alpha
Helix 46
AF1
3
154 168Right-handed alpha
Helix 47
AF2
3
173 187Right-handed alpha
Helix 48
AF3
3
191 204Right-handed alpha
Helix 49
AF4
3
215 229Right-handed alpha
Helix 50
AF5
3
233 242Right-handed alpha
Helix 51
AF6
3
245 251Right-handed alpha
Helix 52
AF7
3
253 272Right-handed alpha
Helix 53
AF8
3
277 287Right-handed alpha
Helix 54
AF9
3
293 312Right-handed alpha
Helix 55
AG1
5
7 29Right-handed alpha
Helix 56
AG2
5
29 59Right-handed alpha
Helix 57
AG3
5
63 68Right-handed 310
Helix 58
AG4
5
72 81Right-handed alpha
Helix 59
AG5
5
87 107Right-handed alpha
Helix 60
AG6
5
114 119Right-handed alpha
Helix 61
AG7
6
30 42Right-handed alpha
Helix 62
AG8
6
46 59Right-handed alpha
Helix 63
AG9
6
72 95Right-handed alpha
Helix 64
AH1
6
98 120Right-handed alpha
Helix 65
AH2
6
121 131Right-handed alpha
Helix 66
AH3
6
133 138Right-handed alpha
Helix 67
AH4
8
4 9Right-handed 310
Helix 68
AH5
8
26 31Right-handed alpha
Helix 69
AH6
8
31 39Right-handed alpha
Helix 70
AH7
8
39 79Right-handed alpha
Helix 71
AH8
9
4 16Right-handed alpha
Helix 72
AH9
9
19 24Right-handed alpha
Helix 73
AI1
9
33 55Right-handed alpha
Helix 74
AI2
9
76 80Right-handed 310
Helix 75
AI3
9
82 96Right-handed alpha
Helix 76
AI4
A
55 68Right-handed alpha
Helix 77
AI5
A
70 92Right-handed alpha
Helix 78
AI6
A
95 126Right-handed alpha
Helix 79
AI7
B
55 68Right-handed alpha
Helix 80
AI8
B
70 92Right-handed alpha
Helix 81
AI9
B
95 126Right-handed alpha
Helix 82
AJ1
C
55 68Right-handed alpha
Helix 83
AJ2
C
70 92Right-handed alpha
Helix 84
AJ3
C
95 126Right-handed alpha
Helix 85
AJ4
D
55 68Right-handed alpha
Helix 86
AJ5
D
70 92Right-handed alpha
Helix 87
AJ6
D
95 126Right-handed alpha
Helix 88
AJ7
E
55 68Right-handed alpha
Helix 89
AJ8
E
70 92Right-handed alpha
Helix 90
AJ9
E
95 126Right-handed alpha
Helix 91
AK1
F
55 68Right-handed alpha
Helix 92
AK2
F
70 92Right-handed alpha
Helix 93
AK3
F
95 126Right-handed alpha
Helix 94
AK4
G
55 68Right-handed alpha
Helix 95
AK5
G
70 92Right-handed alpha
Helix 96
AK6
G
95 126Right-handed alpha
Helix 97
AK7
H
55 68Right-handed alpha
Helix 98
AK8
H
70 92Right-handed alpha
Helix 99
AK9
H
95 126Right-handed alpha
Helix 100
AL1
I
55 68Right-handed alpha
Helix 101
AL2
I
70 92Right-handed alpha
Helix 102
AL3
I
95 126Right-handed alpha
Helix 103
AL4
J
55 68Right-handed alpha
Helix 104
AL5
J
70 92Right-handed alpha
Helix 105
AL6
J
95 126Right-handed alpha
Helix 106
AL7
M
104 119Right-handed alpha
Helix 107
AL8
M
134 145Right-handed alpha
Helix 108
AL9
M
147 166Right-handed alpha
Helix 109
AM1
M
177 201Right-handed alpha
Helix 110
AM2
M
220 266Right-handed alpha
Helix 111
AM3
M
270 308Right-handed alpha
Helix 112
AM4
M
309 311Right-handed 310
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There are 2 sheets in PDB entry 6RD7. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
183 185first strand
Strand 2
1
226 228anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
314 317first strand
Strand 2
M
320 323anti-parallel
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