Analysis of interatomic Contacts of Structural Units in PDB entry:
6RD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RD8 entry

There are 18 chains in PDB entry 6RD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
0
 MET 1HIS 81
1
 TYR 23GLY 617
3
 PRO 77GLY 321
5
 MET 1PHE 123
6
 GLU 28LEU 151
8
 VAL 2HIS 89
9
 MET 1SER 96
A
 SER 54ALA 127
B
 SER 54ALA 127
C
 SER 54ALA 127
D
 SER 54ALA 127
E
 SER 54ALA 127
F
 SER 54ALA 127
G
 SER 54ALA 127
H
 SER 54ALA 127
I
 SER 54ALA 127
J
 SER 54ALA 127
M
 SER 95LYS 324
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are107 helices in PDB entry 6RD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
0
3 10Right-handed alpha
Helix 2
AA2
0
17 31Right-handed alpha
Helix 3
AA3
0
43 50Right-handed alpha
Helix 4
AA4
0
51 56Right-handed alpha
Helix 5
AA5
0
57 61Right-handed 310
Helix 6
AA6
1
45 74Right-handed alpha
Helix 7
AA7
1
106 143Right-handed alpha
Helix 8
AA8
1
163 177Right-handed alpha
Helix 9
AA9
1
190 205Right-handed alpha
Helix 10
AB1
1
209 223Right-handed alpha
Helix 11
AB2
1
241 271Right-handed alpha
Helix 12
AB3
1
272 277Right-handed 310
Helix 13
AB4
1
278 282Right-handed 310
Helix 14
AB5
1
289 293Right-handed 310
Helix 15
AB6
1
297 306Right-handed alpha
Helix 16
AB7
1
310 317Right-handed alpha
Helix 17
AB8
1
318 322Right-handed 310
Helix 18
AB9
1
323 327Right-handed 310
Helix 19
AC1
1
338 351Right-handed alpha
Helix 20
AC2
1
353 363Right-handed alpha
Helix 21
AC3
1
364 367Right-handed 310
Helix 22
AC4
1
375 388Right-handed alpha
Helix 23
AC5
1
392 421Right-handed alpha
Helix 24
AC6
1
425 432Right-handed alpha
Helix 25
AC7
1
435 446Right-handed alpha
Helix 26
AC8
1
446 461Right-handed alpha
Helix 27
AC9
1
463 479Right-handed alpha
Helix 28
AD1
1
480 483Right-handed 310
Helix 29
AD2
1
485 490Right-handed alpha
Helix 30
AD3
1
490 515Right-handed alpha
Helix 31
AD4
1
518 540Right-handed alpha
Helix 32
AD5
1
541 549Right-handed alpha
Helix 33
AD6
1
549 562Right-handed alpha
Helix 34
AD7
1
566 574Right-handed alpha
Helix 35
AD8
1
576 588Right-handed alpha
Helix 36
AD9
1
589 591Right-handed 310
Helix 37
AE1
1
592 606Right-handed alpha
Helix 38
AE2
3
78 87Right-handed alpha
Helix 39
AE3
3
91 99Right-handed alpha
Helix 40
AE4
3
102 114Right-handed alpha
Helix 41
AE5
3
117 129Right-handed alpha
Helix 42
AE6
3
136 151Right-handed alpha
Helix 43
AE7
3
154 168Right-handed alpha
Helix 44
AE8
3
173 187Right-handed alpha
Helix 45
AE9
3
191 204Right-handed alpha
Helix 46
AF1
3
215 229Right-handed alpha
Helix 47
AF2
3
233 241Right-handed alpha
Helix 48
AF3
3
245 251Right-handed alpha
Helix 49
AF4
3
253 272Right-handed alpha
Helix 50
AF5
3
275 277Right-handed 310
Helix 51
AF6
3
278 287Right-handed alpha
Helix 52
AF7
3
293 312Right-handed alpha
Helix 53
AF8
5
7 29Right-handed alpha
Helix 54
AF9
5
29 59Right-handed alpha
Helix 55
AG1
5
63 68Right-handed 310
Helix 56
AG2
5
72 81Right-handed alpha
Helix 57
AG3
5
87 107Right-handed alpha
Helix 58
AG4
5
114 119Right-handed alpha
Helix 59
AG5
6
30 42Right-handed alpha
Helix 60
AG6
6
46 58Right-handed alpha
Helix 61
AG7
6
72 96Right-handed alpha
Helix 62
AG8
6
98 120Right-handed alpha
Helix 63
AG9
6
121 133Right-handed alpha
Helix 64
AH1
6
133 138Right-handed alpha
Helix 65
AH2
8
5 9Right-handed 310
Helix 66
AH3
8
26 31Right-handed alpha
Helix 67
AH4
8
31 39Right-handed alpha
Helix 68
AH5
8
39 79Right-handed alpha
Helix 69
AH6
9
2 17Right-handed alpha
Helix 70
AH7
9
32 56Right-handed alpha
Helix 71
AH8
9
82 95Right-handed alpha
Helix 72
AH9
A
55 68Right-handed alpha
Helix 73
AI1
A
69 92Right-handed alpha
Helix 74
AI2
A
95 126Right-handed alpha
Helix 75
AI3
B
55 67Right-handed alpha
Helix 76
AI4
B
69 92Right-handed alpha
Helix 77
AI5
B
95 125Right-handed alpha
Helix 78
AI6
C
55 69Right-handed alpha
Helix 79
AI7
C
70 92Right-handed alpha
Helix 80
AI8
C
95 126Right-handed alpha
Helix 81
AI9
D
55 68Right-handed alpha
Helix 82
AJ1
D
70 92Right-handed alpha
Helix 83
AJ2
D
95 126Right-handed alpha
Helix 84
AJ3
E
55 68Right-handed alpha
Helix 85
AJ4
E
70 92Right-handed alpha
Helix 86
AJ5
E
95 126Right-handed alpha
Helix 87
AJ6
F
55 69Right-handed alpha
Helix 88
AJ7
F
70 92Right-handed alpha
Helix 89
AJ8
F
95 126Right-handed alpha
Helix 90
AJ9
G
55 68Right-handed alpha
Helix 91
AK1
G
70 92Right-handed alpha
Helix 92
AK2
G
95 126Right-handed alpha
Helix 93
AK3
H
55 69Right-handed alpha
Helix 94
AK4
H
70 92Right-handed alpha
Helix 95
AK5
H
95 127Right-handed alpha
Helix 96
AK6
I
55 68Right-handed alpha
Helix 97
AK7
I
70 92Right-handed alpha
Helix 98
AK8
I
95 127Right-handed alpha
Helix 99
AK9
J
55 68Right-handed alpha
Helix 100
AL1
J
70 92Right-handed alpha
Helix 101
AL2
J
95 126Right-handed alpha
Helix 102
AL3
M
104 120Right-handed alpha
Helix 103
AL4
M
134 145Right-handed alpha
Helix 104
AL5
M
147 166Right-handed alpha
Helix 105
AL6
M
177 200Right-handed alpha
Helix 106
AL7
M
220 264Right-handed alpha
Helix 107
AL8
M
270 309Right-handed alpha
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There are 2 sheets in PDB entry 6RD8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
183 184first strand
Strand 2
1
227 228anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
315 317first strand
Strand 2
M
320 322anti-parallel
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