Analysis of interatomic Contacts of Structural Units in PDB entry:
6RDA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RDA entry

There are 13 chains in PDB entry 6RDA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
0
 SER 2HIS 82
1
 TYR 23GLY 617
2
 GLU 5PHE 445
3
 PRO 77GLY 321
4
 ALA 5ALA 294
5
 MET 1PHE 123
6
 GLU 28LEU 151
7
 LEU 15GLN 190
8
 VAL 2HIS 89
9
 MET 1ASN 97
M
 SER 95LYS 324
P
 LYS 150ILE 229
T
 ALA 40PRO 79
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are136 helices in PDB entry 6RDA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
0
3 8Right-handed alpha
Helix 2
AA2
0
17 31Right-handed alpha
Helix 3
AA3
0
43 50Right-handed alpha
Helix 4
AA4
0
51 56Right-handed alpha
Helix 5
AA5
1
45 73Right-handed alpha
Helix 6
AA6
1
96 100Right-handed 310
Helix 7
AA7
1
103 105Right-handed 310
Helix 8
AA8
1
106 139Right-handed alpha
Helix 9
AA9
1
163 176Right-handed alpha
Helix 10
AB1
1
190 204Right-handed alpha
Helix 11
AB2
1
209 224Right-handed alpha
Helix 12
AB3
1
241 271Right-handed alpha
Helix 13
AB4
1
272 277Right-handed 310
Helix 14
AB5
1
282 286Right-handed 310
Helix 15
AB6
1
289 293Right-handed 310
Helix 16
AB7
1
297 305Right-handed alpha
Helix 17
AB8
1
310 316Right-handed alpha
Helix 18
AB9
1
323 327Right-handed 310
Helix 19
AC1
1
330 334Right-handed 310
Helix 20
AC2
1
338 351Right-handed alpha
Helix 21
AC3
1
353 362Right-handed alpha
Helix 22
AC4
1
363 367Right-handed 310
Helix 23
AC5
1
375 388Right-handed alpha
Helix 24
AC6
1
392 415Right-handed alpha
Helix 25
AC7
1
416 421Right-handed alpha
Helix 26
AC8
1
425 432Right-handed alpha
Helix 27
AC9
1
435 444Right-handed alpha
Helix 28
AD1
1
446 460Right-handed alpha
Helix 29
AD2
1
463 478Right-handed alpha
Helix 30
AD3
1
479 483Right-handed 310
Helix 31
AD4
1
485 490Right-handed alpha
Helix 32
AD5
1
490 515Right-handed alpha
Helix 33
AD6
1
518 536Right-handed alpha
Helix 34
AD7
1
541 549Right-handed alpha
Helix 35
AD8
1
549 562Right-handed alpha
Helix 36
AD9
1
566 574Right-handed alpha
Helix 37
AE1
1
576 586Right-handed alpha
Helix 38
AE2
1
588 591Right-handed 310
Helix 39
AE3
1
592 597Right-handed alpha
Helix 40
AE4
1
597 606Right-handed alpha
Helix 41
AE5
2
8 17Right-handed alpha
Helix 42
AE6
2
25 39Right-handed alpha
Helix 43
AE7
2
44 58Right-handed alpha
Helix 44
AE8
2
62 77Right-handed alpha
Helix 45
AE9
2
80 86Right-handed alpha
Helix 46
AF1
2
87 94Right-handed alpha
Helix 47
AF2
2
99 113Right-handed alpha
Helix 48
AF3
2
117 127Right-handed alpha
Helix 49
AF4
2
136 150Right-handed alpha
Helix 50
AF5
2
154 168Right-handed alpha
Helix 51
AF6
2
171 186Right-handed alpha
Helix 52
AF7
2
189 198Right-handed alpha
Helix 53
AF8
2
209 221Right-handed alpha
Helix 54
AF9
2
228 233Right-handed alpha
Helix 55
AG1
2
240 253Right-handed alpha
Helix 56
AG2
2
258 276Right-handed alpha
Helix 57
AG3
2
277 280Right-handed 310
Helix 58
AG4
2
281 295Right-handed alpha
Helix 59
AG5
2
305 321Right-handed alpha
Helix 60
AG6
2
326 341Right-handed alpha
Helix 61
AG7
2
345 353Right-handed alpha
Helix 62
AG8
2
396 408Right-handed alpha
Helix 63
AG9
2
418 422Right-handed alpha
Helix 64
AH1
2
426 440Right-handed alpha
Helix 65
AH2
3
78 87Right-handed alpha
Helix 66
AH3
3
91 99Right-handed alpha
Helix 67
AH4
3
102 113Right-handed alpha
Helix 68
AH5
3
119 128Right-handed alpha
Helix 69
AH6
3
131 135Right-handed 310
Helix 70
AH7
3
136 150Right-handed alpha
Helix 71
AH8
3
154 166Right-handed alpha
Helix 72
AH9
3
168 172Right-handed 310
Helix 73
AI1
3
173 187Right-handed alpha
Helix 74
AI2
3
191 204Right-handed alpha
Helix 75
AI3
3
215 229Right-handed alpha
Helix 76
AI4
3
233 241Right-handed alpha
Helix 77
AI5
3
242 244Right-handed 310
Helix 78
AI6
3
245 251Right-handed alpha
Helix 79
AI7
3
253 271Right-handed alpha
Helix 80
AI8
3
275 277Right-handed 310
Helix 81
AI9
3
278 287Right-handed alpha
Helix 82
AJ1
3
288 292Right-handed 310
Helix 83
AJ2
3
293 309Right-handed alpha
Helix 84
AJ3
4
9 14Right-handed alpha
Helix 85
AJ4
4
19 35Right-handed alpha
Helix 86
AJ5
4
47 68Right-handed alpha
Helix 87
AJ6
4
79 96Right-handed alpha
Helix 88
AJ7
4
100 113Right-handed alpha
Helix 89
AJ8
4
118 126Right-handed alpha
Helix 90
AJ9
4
131 150Right-handed alpha
Helix 91
AK1
4
159 164Right-handed alpha
Helix 92
AK2
4
164 177Right-handed alpha
Helix 93
AK3
4
179 189Right-handed alpha
Helix 94
AK4
4
194 234Right-handed alpha
Helix 95
AK5
4
237 259Right-handed alpha
Helix 96
AK6
4
262 285Right-handed alpha
Helix 97
AK7
5
7 29Right-handed alpha
Helix 98
AK8
5
29 57Right-handed alpha
Helix 99
AK9
5
63 67Right-handed 310
Helix 100
AL1
5
72 81Right-handed alpha
Helix 101
AL2
5
89 107Right-handed alpha
Helix 102
AL3
5
114 119Right-handed alpha
Helix 103
AL4
6
30 41Right-handed alpha
Helix 104
AL5
6
46 56Right-handed alpha
Helix 105
AL6
6
72 94Right-handed alpha
Helix 106
AL7
6
98 104Right-handed alpha
Helix 107
AL8
6
104 118Right-handed alpha
Helix 108
AL9
6
121 130Right-handed alpha
Helix 109
AM1
7
68 72Right-handed 310
Helix 110
AM2
7
83 105Right-handed alpha
Helix 111
AM3
7
109 114Right-handed 310
Helix 112
AM4
7
115 120Right-handed alpha
Helix 113
AM5
7
125 145Right-handed alpha
Helix 114
AM6
7
146 148Right-handed 310
Helix 115
AM7
7
149 155Right-handed alpha
Helix 116
AM8
7
157 166Right-handed alpha
Helix 117
AM9
7
174 181Right-handed alpha
Helix 118
AN1
7
182 187Right-handed alpha
Helix 119
AN2
8
26 31Right-handed alpha
Helix 120
AN3
8
31 39Right-handed alpha
Helix 121
AN4
8
39 78Right-handed alpha
Helix 122
AN5
9
4 16Right-handed alpha
Helix 123
AN6
9
36 55Right-handed alpha
Helix 124
AN7
9
82 97Right-handed alpha
Helix 125
AN8
M
104 119Right-handed alpha
Helix 126
AN9
M
134 144Right-handed alpha
Helix 127
AO1
M
147 164Right-handed alpha
Helix 128
AO2
M
165 168Right-handed 310
Helix 129
AO3
M
173 176Right-handed 310
Helix 130
AO4
M
177 199Right-handed alpha
Helix 131
AO5
M
221 265Right-handed alpha
Helix 132
AO6
M
270 308Right-handed alpha
Helix 133
AO7
M
309 311Right-handed 310
Helix 134
AO8
P
163 175Right-handed alpha
Helix 135
AO9
P
211 226Right-handed alpha
Helix 136
AP1
T
57 75Right-handed alpha
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There are 6 sheets in PDB entry 6RDA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
183 184first strand
Strand 2
1
227 228anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
368 372first strand
Strand 2
2
375 382anti-parallel
Strand 3
2
414 417parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
314 317first strand
Strand 2
M
320 323anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
35 41first strand
Strand 2
7
45 52anti-parallel
Strand 3
7
55 57anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
7
35 41first strand
Strand 2
7
45 52anti-parallel
Strand 3
7
60 62anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
P
188 190first strand
Strand 2
P
155 158parallel
Strand 3
P
197 201anti-parallel
Strand 4
P
206 210anti-parallel
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