Analysis of interatomic Contacts of Structural Units in PDB entry:
6RDE

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RDE entry

There are 20 chains in PDB entry 6RDE (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 54	ALA 127
B	SER 54	ALA 127
C	SER 54	ALA 127
D	SER 54	ALA 127
E	SER 54	ALA 127
F	SER 54	ALA 127
G	SER 54	ALA 127
H	SER 54	ALA 127
I	SER 54	ALA 127
J	SER 54	ALA 127
P	LEU 37	LYS 149
Q	ALA 3	ASN 74
R	GLU 23	ALA 199
S	SER 39	MET 315
T	PRO 80	ALA 562
U	ALA 40	ALA 562
V	LYS 43	ALA 562
X	ALA 37	ASN 574
Y	PRO 33	GLU 552
Z	ASP 36	ASN 574

There are196 helices in PDB entry 6RDE. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	67	Right-handed alpha
Helix 2	AA2	A	69	92	Right-handed alpha
Helix 3	AA3	A	95	104	Right-handed alpha
Helix 4	AA4	A	104	125	Right-handed alpha
Helix 5	AA5	B	55	67	Right-handed alpha
Helix 6	AA6	B	69	92	Right-handed alpha
Helix 7	AA7	B	95	112	Right-handed alpha
Helix 8	AA8	B	113	126	Right-handed alpha
Helix 9	AA9	C	55	66	Right-handed alpha
Helix 10	AB1	C	69	92	Right-handed alpha
Helix 11	AB2	C	95	126	Right-handed alpha
Helix 12	AB3	D	55	68	Right-handed alpha
Helix 13	AB4	D	70	92	Right-handed alpha
Helix 14	AB5	D	95	117	Right-handed alpha
Helix 15	AB6	D	117	126	Right-handed alpha
Helix 16	AB7	E	55	67	Right-handed alpha
Helix 17	AB8	E	69	92	Right-handed alpha
Helix 18	AB9	E	95	112	Right-handed alpha
Helix 19	AC1	E	113	125	Right-handed alpha
Helix 20	AC2	F	55	68	Right-handed alpha
Helix 21	AC3	F	69	92	Right-handed alpha
Helix 22	AC4	F	93	96	Right-handed 310
Helix 23	AC5	F	97	111	Right-handed alpha
Helix 24	AC6	F	112	126	Right-handed alpha
Helix 25	AC7	G	55	68	Right-handed alpha
Helix 26	AC8	G	69	92	Right-handed alpha
Helix 27	AC9	G	95	126	Right-handed alpha
Helix 28	AD1	H	55	68	Right-handed alpha
Helix 29	AD2	H	70	90	Right-handed alpha
Helix 30	AD3	H	92	94	Right-handed 310
Helix 31	AD4	H	95	126	Right-handed alpha
Helix 32	AD5	I	55	68	Right-handed alpha
Helix 33	AD6	I	70	92	Right-handed alpha
Helix 34	AD7	I	95	111	Right-handed alpha
Helix 35	AD8	I	112	126	Right-handed alpha
Helix 36	AD9	J	55	68	Right-handed alpha
Helix 37	AE1	J	69	92	Right-handed alpha
Helix 38	AE2	J	97	125	Right-handed alpha
Helix 39	AE3	P	50	64	Right-handed alpha
Helix 40	AE4	P	68	84	Right-handed alpha
Helix 41	AE5	P	84	93	Right-handed alpha
Helix 42	AE6	P	97	109	Right-handed alpha
Helix 43	AE7	P	115	129	Right-handed alpha
Helix 44	AE8	P	130	132	Right-handed 310
Helix 45	AE9	P	133	147	Right-handed alpha
Helix 46	AF1	Q	9	13	Right-handed 310
Helix 47	AF2	Q	15	29	Right-handed alpha
Helix 48	AF3	Q	32	40	Right-handed alpha
Helix 49	AF4	Q	41	44	Right-handed 310
Helix 50	AF5	R	31	41	Right-handed alpha
Helix 51	AF6	R	50	55	Right-handed 310
Helix 52	AF7	R	159	170	Right-handed alpha
Helix 53	AF8	R	174	193	Right-handed alpha
Helix 54	AF9	S	41	89	Right-handed alpha
Helix 55	AG1	S	117	127	Right-handed alpha
Helix 56	AG2	S	143	151	Right-handed alpha
Helix 57	AG3	S	171	185	Right-handed alpha
Helix 58	AG4	S	216	221	Right-handed alpha
Helix 59	AG5	S	238	274	Right-handed alpha
Helix 60	AG6	S	276	315	Right-handed alpha
Helix 61	AG7	T	134	138	Right-handed 310
Helix 62	AG8	T	156	160	Right-handed 310
Helix 63	AG9	T	206	213	Right-handed alpha
Helix 64	AH1	T	230	247	Right-handed alpha
Helix 65	AH2	T	250	253	Right-handed 310
Helix 66	AH3	T	265	280	Right-handed alpha
Helix 67	AH4	T	281	283	Right-handed 310
Helix 68	AH5	T	295	316	Right-handed alpha
Helix 69	AH6	T	327	341	Right-handed alpha
Helix 70	AH7	T	346	350	Right-handed 310
Helix 71	AH8	T	353	363	Right-handed alpha
Helix 72	AH9	T	392	400	Right-handed alpha
Helix 73	AI1	T	409	415	Right-handed alpha
Helix 74	AI2	T	430	435	Right-handed 310
Helix 75	AI3	T	436	441	Right-handed alpha
Helix 76	AI4	T	443	460	Right-handed alpha
Helix 77	AI5	T	469	484	Right-handed alpha
Helix 78	AI6	T	493	506	Right-handed alpha
Helix 79	AI7	T	516	528	Right-handed alpha
Helix 80	AI8	T	529	540	Right-handed alpha
Helix 81	AI9	T	543	556	Right-handed alpha
Helix 82	AJ1	U	45	49	Right-handed 310
Helix 83	AJ2	U	58	63	Right-handed alpha
Helix 84	AJ3	U	65	72	Right-handed alpha
Helix 85	AJ4	U	134	138	Right-handed 310
Helix 86	AJ5	U	156	160	Right-handed 310
Helix 87	AJ6	U	206	213	Right-handed alpha
Helix 88	AJ7	U	230	247	Right-handed alpha
Helix 89	AJ8	U	265	280	Right-handed alpha
Helix 90	AJ9	U	281	283	Right-handed 310
Helix 91	AK1	U	295	316	Right-handed alpha
Helix 92	AK2	U	326	341	Right-handed alpha
Helix 93	AK3	U	346	350	Right-handed 310
Helix 94	AK4	U	353	363	Right-handed alpha
Helix 95	AK5	U	369	373	Right-handed 310
Helix 96	AK6	U	392	402	Right-handed alpha
Helix 97	AK7	U	409	415	Right-handed alpha
Helix 98	AK8	U	436	450	Right-handed alpha
Helix 99	AK9	U	450	458	Right-handed alpha
Helix 100	AL1	U	469	485	Right-handed alpha
Helix 101	AL2	U	493	506	Right-handed alpha
Helix 102	AL3	U	516	528	Right-handed alpha
Helix 103	AL4	U	531	540	Right-handed alpha
Helix 104	AL5	U	543	554	Right-handed alpha
Helix 105	AL6	V	44	49	Right-handed 310
Helix 106	AL7	V	58	67	Right-handed alpha
Helix 107	AL8	V	68	70	Right-handed 310
Helix 108	AL9	V	134	138	Right-handed 310
Helix 109	AM1	V	156	160	Right-handed 310
Helix 110	AM2	V	206	212	Right-handed alpha
Helix 111	AM3	V	230	247	Right-handed alpha
Helix 112	AM4	V	248	249	Right-handed 310
Helix 113	AM5	V	250	253	Right-handed 310
Helix 114	AM6	V	265	280	Right-handed alpha
Helix 115	AM7	V	281	283	Right-handed 310
Helix 116	AM8	V	295	316	Right-handed alpha
Helix 117	AM9	V	327	341	Right-handed alpha
Helix 118	AN1	V	346	350	Right-handed 310
Helix 119	AN2	V	351	352	Right-handed 310
Helix 120	AN3	V	353	363	Right-handed alpha
Helix 121	AN4	V	369	373	Right-handed 310
Helix 122	AN5	V	392	402	Right-handed alpha
Helix 123	AN6	V	409	414	Right-handed alpha
Helix 124	AN7	V	430	435	Right-handed 310
Helix 125	AN8	V	438	457	Right-handed alpha
Helix 126	AN9	V	469	482	Right-handed alpha
Helix 127	AO1	V	493	506	Right-handed alpha
Helix 128	AO2	V	507	511	Right-handed 310
Helix 129	AO3	V	513	516	Right-handed 310
Helix 130	AO4	V	517	528	Right-handed alpha
Helix 131	AO5	V	531	540	Right-handed alpha
Helix 132	AO6	V	548	554	Right-handed alpha
Helix 133	AO7	X	114	118	Right-handed 310
Helix 134	AO8	X	149	153	Right-handed 310
Helix 135	AO9	X	164	171	Right-handed alpha
Helix 136	AP1	X	188	204	Right-handed alpha
Helix 137	AP2	X	216	231	Right-handed alpha
Helix 138	AP3	X	235	242	Right-handed 310
Helix 139	AP4	X	254	259	Right-handed alpha
Helix 140	AP5	X	260	275	Right-handed alpha
Helix 141	AP6	X	286	301	Right-handed alpha
Helix 142	AP7	X	313	323	Right-handed alpha
Helix 143	AP8	X	341	345	Right-handed 310
Helix 144	AP9	X	348	355	Right-handed alpha
Helix 145	AQ1	X	365	371	Right-handed alpha
Helix 146	AQ2	X	393	413	Right-handed alpha
Helix 147	AQ3	X	428	441	Right-handed alpha
Helix 148	AQ4	X	450	455	Right-handed alpha
Helix 149	AQ5	X	462	475	Right-handed alpha
Helix 150	AQ6	X	482	486	Right-handed 310
Helix 151	AQ7	X	491	503	Right-handed alpha
Helix 152	AQ8	X	504	507	Right-handed 310
Helix 153	AQ9	X	526	532	Right-handed alpha
Helix 154	AR1	Y	114	118	Right-handed 310
Helix 155	AR2	Y	149	153	Right-handed 310
Helix 156	AR3	Y	164	171	Right-handed alpha
Helix 157	AR4	Y	190	200	Right-handed alpha
Helix 158	AR5	Y	201	204	Right-handed 310
Helix 159	AR6	Y	216	230	Right-handed alpha
Helix 160	AR7	Y	235	242	Right-handed 310
Helix 161	AR8	Y	254	259	Right-handed alpha
Helix 162	AR9	Y	260	275	Right-handed alpha
Helix 163	AS1	Y	287	298	Right-handed alpha
Helix 164	AS2	Y	313	323	Right-handed alpha
Helix 165	AS3	Y	342	345	Right-handed 310
Helix 166	AS4	Y	348	355	Right-handed alpha
Helix 167	AS5	Y	356	358	Right-handed 310
Helix 168	AS6	Y	365	370	Right-handed alpha
Helix 169	AS7	Y	393	413	Right-handed alpha
Helix 170	AS8	Y	413	420	Right-handed alpha
Helix 171	AS9	Y	421	425	Right-handed 310
Helix 172	AT1	Y	426	443	Right-handed alpha
Helix 173	AT2	Y	450	455	Right-handed alpha
Helix 174	AT3	Y	462	476	Right-handed alpha
Helix 175	AT4	Y	482	486	Right-handed 310
Helix 176	AT5	Y	491	508	Right-handed alpha
Helix 177	AT6	Y	526	533	Right-handed alpha
Helix 178	AT7	Z	114	118	Right-handed 310
Helix 179	AT8	Z	164	171	Right-handed alpha
Helix 180	AT9	Z	188	200	Right-handed alpha
Helix 181	AU1	Z	217	230	Right-handed alpha
Helix 182	AU2	Z	235	242	Right-handed 310
Helix 183	AU3	Z	254	275	Right-handed alpha
Helix 184	AU4	Z	287	299	Right-handed alpha
Helix 185	AU5	Z	313	323	Right-handed alpha
Helix 186	AU6	Z	342	345	Right-handed 310
Helix 187	AU7	Z	348	354	Right-handed alpha
Helix 188	AU8	Z	365	371	Right-handed alpha
Helix 189	AU9	Z	388	393	Right-handed alpha
Helix 190	AV1	Z	393	418	Right-handed alpha
Helix 191	AV2	Z	430	444	Right-handed alpha
Helix 192	AV3	Z	448	452	Right-handed 310
Helix 193	AV4	Z	462	476	Right-handed alpha
Helix 194	AV5	Z	482	486	Right-handed 310
Helix 195	AV6	Z	491	508	Right-handed alpha
Helix 196	AV7	Z	526	534	Right-handed alpha

There are 27 sheets in PDB entry 6RDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	61	63	first strand
Strand 2	Q	47	51	anti-parallel
Strand 3	S	158	163	anti-parallel
Strand 4	S	136	142	parallel
Strand 5	S	99	105	parallel
Strand 6	S	189	197	parallel
Strand 7	S	203	211	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	80	82	first strand
Strand 2	R	70	75	anti-parallel
Strand 3	R	85	86	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	80	82	first strand
Strand 2	R	70	75	anti-parallel
Strand 3	R	142	145	parallel
Strand 4	R	134	136	anti-parallel
Strand 5	R	107	109	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	97	100	first strand
Strand 2	R	88	92	anti-parallel
Strand 3	R	114	119	anti-parallel
Strand 4	R	124	129	anti-parallel
Strand 5	R	149	151	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	87	89	first strand
Strand 2	T	94	97	anti-parallel
Strand 3	T	127	132	anti-parallel
Strand 4	T	116	122	anti-parallel
Strand 5	Y	37	44	anti-parallel
Strand 6	T	107	111	first strand
Strand 7	T	144	150	anti-parallel

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There are 12 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	87	89	first strand
Strand 2	T	94	97	anti-parallel
Strand 3	T	127	132	anti-parallel
Strand 4	T	116	122	anti-parallel
Strand 5	Y	101	108	first strand
Strand 6	Y	61	65	anti-parallel
Strand 7	Y	73	79	anti-parallel
Strand 8	Y	84	89	anti-parallel
Strand 9	Y	47	51	anti-parallel
Strand 10	Y	37	44	anti-parallel
Strand 11	T	107	111	first strand
Strand 12	T	144	150	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	152	155	first strand
Strand 2	T	181	184	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	163	164	first strand
Strand 2	T	285	290	parallel
Strand 3	T	255	262	parallel
Strand 4	T	319	325	parallel
Strand 5	T	376	384	parallel
Strand 6	T	221	225	parallel
Strand 7	T	404	408	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	201	202	first strand
Strand 2	T	215	216	anti-parallel

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There are 14 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	116	122	first strand
Strand 2	U	107	111	anti-parallel
Strand 3	U	143	150	anti-parallel
Strand 4	U	85	91	anti-parallel
Strand 5	U	94	99	anti-parallel
Strand 6	U	126	132	anti-parallel
Strand 7	U	116	122	anti-parallel
Strand 8	X	38	44	anti-parallel
Strand 9	X	101	104	anti-parallel
Strand 10	X	62	65	anti-parallel
Strand 11	X	73	81	anti-parallel
Strand 12	X	84	89	anti-parallel
Strand 13	X	47	52	anti-parallel
Strand 14	X	38	44	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	152	155	first strand
Strand 2	U	181	184	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	163	165	first strand
Strand 2	U	285	290	parallel
Strand 3	U	255	262	parallel
Strand 4	U	319	325	parallel
Strand 5	U	376	384	parallel
Strand 6	U	222	225	parallel
Strand 7	U	405	408	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	201	202	first strand
Strand 2	U	215	216	anti-parallel

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There are 14 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	116	122	first strand
Strand 2	V	107	111	anti-parallel
Strand 3	V	143	150	anti-parallel
Strand 4	V	84	89	anti-parallel
Strand 5	V	94	99	anti-parallel
Strand 6	V	127	131	anti-parallel
Strand 7	V	116	122	anti-parallel
Strand 8	Z	38	44	anti-parallel
Strand 9	Z	101	104	anti-parallel
Strand 10	Z	62	65	anti-parallel
Strand 11	Z	73	79	anti-parallel
Strand 12	Z	84	89	anti-parallel
Strand 13	Z	47	52	anti-parallel
Strand 14	Z	38	44	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	152	155	first strand
Strand 2	V	181	184	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	163	164	first strand
Strand 2	V	285	290	parallel
Strand 3	V	255	262	parallel
Strand 4	V	319	325	parallel
Strand 5	V	376	384	parallel
Strand 6	V	221	225	parallel
Strand 7	V	404	408	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	110	113	first strand
Strand 2	X	139	142	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	121	122	first strand
Strand 2	X	246	250	parallel
Strand 3	X	208	215	parallel
Strand 4	X	279	285	parallel
Strand 5	X	332	338	parallel
Strand 6	X	178	182	parallel
Strand 7	X	358	363	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	159	160	first strand
Strand 2	X	173	174	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	559	561	first strand
Strand 2	X	567	569	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	110	113	first strand
Strand 2	Y	139	142	anti-parallel

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There are 7 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	121	122	first strand
Strand 2	Y	244	249	parallel
Strand 3	Y	207	213	parallel
Strand 4	Y	279	285	parallel
Strand 5	Y	332	340	parallel
Strand 6	Y	178	183	parallel
Strand 7	Y	360	363	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	159	160	first strand
Strand 2	Y	173	174	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	110	113	first strand
Strand 2	Z	139	142	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	121	122	first strand
Strand 2	Z	244	249	parallel
Strand 3	Z	208	213	parallel
Strand 4	Z	279	285	parallel
Strand 5	Z	332	340	parallel
Strand 6	Z	178	183	parallel
Strand 7	Z	360	363	parallel
Strand 8	Z	383	384	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	159	160	first strand
Strand 2	Z	173	174	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	559	561	first strand
Strand 2	Z	567	569	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RDE

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RDE