Analysis of interatomic Contacts of Structural Units in PDB entry:
6RDP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RDP entry

There are 20 chains in PDB entry 6RDP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 54	ALA 127
B	SER 54	ALA 127
C	SER 54	ALA 127
D	SER 54	ALA 127
E	SER 54	ALA 127
F	SER 54	ALA 127
G	SER 54	ALA 127
H	SER 54	ALA 127
I	SER 54	ALA 127
J	SER 54	ALA 127
P	LEU 37	LYS 150
Q	ALA 3	ASN 74
R	GLU 23	ALA 199
S	SER 39	MET 315
T	GLY 85	ALA 562
U	ALA 40	ALA 562
V	LYS 43	ALA 562
X	PRO 33	ASN 574
Y	ASP 36	SER 556
Z	ALA 37	ASN 574

There are183 helices in PDB entry 6RDP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	66	Right-handed alpha
Helix 2	AA2	A	67	69	Right-handed 310
Helix 3	AA3	A	70	92	Right-handed alpha
Helix 4	AA4	A	93	96	Right-handed 310
Helix 5	AA5	A	97	126	Right-handed alpha
Helix 6	AA6	B	55	68	Right-handed alpha
Helix 7	AA7	B	70	92	Right-handed alpha
Helix 8	AA8	B	98	124	Right-handed alpha
Helix 9	AA9	C	55	68	Right-handed alpha
Helix 10	AB1	C	70	90	Right-handed alpha
Helix 11	AB2	C	97	126	Right-handed alpha
Helix 12	AB3	D	58	66	Right-handed alpha
Helix 13	AB4	D	67	69	Right-handed 310
Helix 14	AB5	D	70	92	Right-handed alpha
Helix 15	AB6	D	95	127	Right-handed alpha
Helix 16	AB7	E	55	68	Right-handed alpha
Helix 17	AB8	E	69	90	Right-handed alpha
Helix 18	AB9	E	97	110	Right-handed alpha
Helix 19	AC1	E	110	126	Right-handed alpha
Helix 20	AC2	F	55	66	Right-handed alpha
Helix 21	AC3	F	69	92	Right-handed alpha
Helix 22	AC4	F	95	124	Right-handed alpha
Helix 23	AC5	G	55	66	Right-handed alpha
Helix 24	AC6	G	67	69	Right-handed 310
Helix 25	AC7	G	70	92	Right-handed alpha
Helix 26	AC8	G	95	127	Right-handed alpha
Helix 27	AC9	H	55	68	Right-handed alpha
Helix 28	AD1	H	70	92	Right-handed alpha
Helix 29	AD2	H	95	111	Right-handed alpha
Helix 30	AD3	H	111	126	Right-handed alpha
Helix 31	AD4	I	55	66	Right-handed alpha
Helix 32	AD5	I	69	92	Right-handed alpha
Helix 33	AD6	I	93	96	Right-handed 310
Helix 34	AD7	I	97	127	Right-handed alpha
Helix 35	AD8	J	55	68	Right-handed alpha
Helix 36	AD9	J	71	90	Right-handed alpha
Helix 37	AE1	J	92	96	Right-handed 310
Helix 38	AE2	J	97	109	Right-handed alpha
Helix 39	AE3	J	110	126	Right-handed alpha
Helix 40	AE4	P	50	60	Right-handed alpha
Helix 41	AE5	P	66	84	Right-handed alpha
Helix 42	AE6	P	84	93	Right-handed alpha
Helix 43	AE7	P	97	105	Right-handed alpha
Helix 44	AE8	P	117	125	Right-handed alpha
Helix 45	AE9	P	129	132	Right-handed 310
Helix 46	AF1	P	133	147	Right-handed alpha
Helix 47	AF2	Q	15	29	Right-handed alpha
Helix 48	AF3	Q	32	37	Right-handed alpha
Helix 49	AF4	Q	40	44	Right-handed 310
Helix 50	AF5	R	29	41	Right-handed alpha
Helix 51	AF6	R	50	55	Right-handed 310
Helix 52	AF7	R	153	155	Right-handed 310
Helix 53	AF8	R	158	168	Right-handed alpha
Helix 54	AF9	R	174	196	Right-handed alpha
Helix 55	AG1	S	40	70	Right-handed alpha
Helix 56	AG2	S	74	79	Right-handed alpha
Helix 57	AG3	S	81	90	Right-handed alpha
Helix 58	AG4	S	114	128	Right-handed alpha
Helix 59	AG5	S	143	148	Right-handed alpha
Helix 60	AG6	S	171	182	Right-handed alpha
Helix 61	AG7	S	227	231	Right-handed 310
Helix 62	AG8	S	238	313	Right-handed alpha
Helix 63	AG9	T	134	138	Right-handed 310
Helix 64	AH1	T	156	160	Right-handed 310
Helix 65	AH2	T	206	213	Right-handed alpha
Helix 66	AH3	T	230	247	Right-handed alpha
Helix 67	AH4	T	265	280	Right-handed alpha
Helix 68	AH5	T	281	283	Right-handed 310
Helix 69	AH6	T	295	316	Right-handed alpha
Helix 70	AH7	T	329	341	Right-handed alpha
Helix 71	AH8	T	353	363	Right-handed alpha
Helix 72	AH9	T	392	402	Right-handed alpha
Helix 73	AI1	T	409	415	Right-handed alpha
Helix 74	AI2	T	430	434	Right-handed 310
Helix 75	AI3	T	436	441	Right-handed alpha
Helix 76	AI4	T	442	460	Right-handed alpha
Helix 77	AI5	T	469	484	Right-handed alpha
Helix 78	AI6	T	494	506	Right-handed alpha
Helix 79	AI7	T	513	515	Right-handed 310
Helix 80	AI8	T	516	527	Right-handed alpha
Helix 81	AI9	T	531	540	Right-handed alpha
Helix 82	AJ1	T	543	554	Right-handed alpha
Helix 83	AJ2	U	41	47	Right-handed alpha
Helix 84	AJ3	U	58	64	Right-handed alpha
Helix 85	AJ4	U	65	72	Right-handed alpha
Helix 86	AJ5	U	134	138	Right-handed 310
Helix 87	AJ6	U	156	160	Right-handed 310
Helix 88	AJ7	U	206	213	Right-handed alpha
Helix 89	AJ8	U	230	247	Right-handed alpha
Helix 90	AJ9	U	265	279	Right-handed alpha
Helix 91	AK1	U	280	284	Right-handed 310
Helix 92	AK2	U	295	316	Right-handed alpha
Helix 93	AK3	U	326	341	Right-handed alpha
Helix 94	AK4	U	353	363	Right-handed alpha
Helix 95	AK5	U	369	373	Right-handed 310
Helix 96	AK6	U	392	400	Right-handed alpha
Helix 97	AK7	U	409	415	Right-handed alpha
Helix 98	AK8	U	436	460	Right-handed alpha
Helix 99	AK9	U	469	485	Right-handed alpha
Helix 100	AL1	U	493	506	Right-handed alpha
Helix 101	AL2	U	516	528	Right-handed alpha
Helix 102	AL3	U	530	540	Right-handed alpha
Helix 103	AL4	U	543	554	Right-handed alpha
Helix 104	AL5	V	45	49	Right-handed 310
Helix 105	AL6	V	58	67	Right-handed alpha
Helix 106	AL7	V	68	70	Right-handed 310
Helix 107	AL8	V	134	138	Right-handed 310
Helix 108	AL9	V	156	160	Right-handed 310
Helix 109	AM1	V	206	213	Right-handed alpha
Helix 110	AM2	V	230	246	Right-handed alpha
Helix 111	AM3	V	265	280	Right-handed alpha
Helix 112	AM4	V	281	283	Right-handed 310
Helix 113	AM5	V	295	316	Right-handed alpha
Helix 114	AM6	V	326	341	Right-handed alpha
Helix 115	AM7	V	353	363	Right-handed alpha
Helix 116	AM8	V	369	373	Right-handed 310
Helix 117	AM9	V	392	402	Right-handed alpha
Helix 118	AN1	V	409	414	Right-handed alpha
Helix 119	AN2	V	430	435	Right-handed 310
Helix 120	AN3	V	438	456	Right-handed alpha
Helix 121	AN4	V	469	482	Right-handed alpha
Helix 122	AN5	V	493	506	Right-handed alpha
Helix 123	AN6	V	513	515	Right-handed 310
Helix 124	AN7	V	516	526	Right-handed alpha
Helix 125	AN8	V	530	540	Right-handed alpha
Helix 126	AN9	V	543	554	Right-handed alpha
Helix 127	AO1	X	114	118	Right-handed 310
Helix 128	AO2	X	164	171	Right-handed alpha
Helix 129	AO3	X	188	204	Right-handed alpha
Helix 130	AO4	X	216	230	Right-handed alpha
Helix 131	AO5	X	235	242	Right-handed 310
Helix 132	AO6	X	254	275	Right-handed alpha
Helix 133	AO7	X	287	300	Right-handed alpha
Helix 134	AO8	X	313	323	Right-handed alpha
Helix 135	AO9	X	348	355	Right-handed alpha
Helix 136	AP1	X	356	358	Right-handed 310
Helix 137	AP2	X	365	371	Right-handed alpha
Helix 138	AP3	X	388	393	Right-handed alpha
Helix 139	AP4	X	393	421	Right-handed alpha
Helix 140	AP5	X	426	443	Right-handed alpha
Helix 141	AP6	X	450	455	Right-handed alpha
Helix 142	AP7	X	462	476	Right-handed alpha
Helix 143	AP8	X	491	506	Right-handed alpha
Helix 144	AP9	X	526	533	Right-handed alpha
Helix 145	AQ1	Y	114	118	Right-handed 310
Helix 146	AQ2	Y	164	171	Right-handed alpha
Helix 147	AQ3	Y	188	201	Right-handed alpha
Helix 148	AQ4	Y	216	230	Right-handed alpha
Helix 149	AQ5	Y	235	242	Right-handed 310
Helix 150	AQ6	Y	254	275	Right-handed alpha
Helix 151	AQ7	Y	287	297	Right-handed alpha
Helix 152	AQ8	Y	298	301	Right-handed 310
Helix 153	AQ9	Y	313	323	Right-handed alpha
Helix 154	AR1	Y	348	355	Right-handed alpha
Helix 155	AR2	Y	356	358	Right-handed 310
Helix 156	AR3	Y	365	371	Right-handed alpha
Helix 157	AR4	Y	388	393	Right-handed alpha
Helix 158	AR5	Y	393	418	Right-handed alpha
Helix 159	AR6	Y	428	443	Right-handed alpha
Helix 160	AR7	Y	462	475	Right-handed alpha
Helix 161	AR8	Y	482	487	Right-handed 310
Helix 162	AR9	Y	491	508	Right-handed alpha
Helix 163	AS1	Y	526	533	Right-handed alpha
Helix 164	AS2	Y	544	555	Right-handed alpha
Helix 165	AS3	Z	114	118	Right-handed 310
Helix 166	AS4	Z	164	170	Right-handed alpha
Helix 167	AS5	Z	188	204	Right-handed alpha
Helix 168	AS6	Z	216	230	Right-handed alpha
Helix 169	AS7	Z	235	242	Right-handed 310
Helix 170	AS8	Z	254	275	Right-handed alpha
Helix 171	AS9	Z	286	301	Right-handed alpha
Helix 172	AT1	Z	313	323	Right-handed alpha
Helix 173	AT2	Z	348	355	Right-handed alpha
Helix 174	AT3	Z	365	370	Right-handed alpha
Helix 175	AT4	Z	392	412	Right-handed alpha
Helix 176	AT5	Z	413	421	Right-handed alpha
Helix 177	AT6	Z	426	443	Right-handed alpha
Helix 178	AT7	Z	447	449	Right-handed 310
Helix 179	AT8	Z	450	455	Right-handed alpha
Helix 180	AT9	Z	462	476	Right-handed alpha
Helix 181	AU1	Z	482	487	Right-handed 310
Helix 182	AU2	Z	491	508	Right-handed alpha
Helix 183	AU3	Z	526	532	Right-handed alpha

There are 26 sheets in PDB entry 6RDP. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z,

There are 2 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	45	50	first strand
Strand 2	Q	60	65	anti-parallel

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There are 5 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	97	100	first strand
Strand 2	R	88	92	anti-parallel
Strand 3	R	115	119	anti-parallel
Strand 4	R	124	129	anti-parallel
Strand 5	R	149	151	anti-parallel

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There are 3 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	107	109	first strand
Strand 2	R	134	136	anti-parallel
Strand 3	R	142	144	anti-parallel

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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	203	211	first strand
Strand 2	S	189	197	anti-parallel
Strand 3	S	99	105	parallel
Strand 4	S	136	142	parallel
Strand 5	S	158	162	parallel

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There are 6 strands in E sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	86	91	first strand
Strand 2	T	94	98	anti-parallel
Strand 3	T	127	132	anti-parallel
Strand 4	T	116	122	anti-parallel
Strand 5	T	107	111	anti-parallel
Strand 6	T	144	146	anti-parallel

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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	152	155	first strand
Strand 2	T	181	184	anti-parallel

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There are 3 strands in G sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	404	408	first strand
Strand 2	T	221	225	parallel
Strand 3	T	382	384	parallel

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There are 4 strands in H sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	285	290	first strand
Strand 2	T	255	262	parallel
Strand 3	T	319	325	parallel
Strand 4	T	376	381	parallel

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There are 6 strands in I sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	85	91	first strand
Strand 2	U	94	99	anti-parallel
Strand 3	U	126	132	anti-parallel
Strand 4	U	116	122	anti-parallel
Strand 5	U	108	111	anti-parallel
Strand 6	U	144	146	anti-parallel

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There are 2 strands in J sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	152	155	first strand
Strand 2	U	181	184	anti-parallel

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There are 3 strands in K sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	404	408	first strand
Strand 2	U	221	225	parallel
Strand 3	U	382	384	parallel

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There are 4 strands in L sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	285	290	first strand
Strand 2	U	255	262	parallel
Strand 3	U	319	325	parallel
Strand 4	U	376	381	parallel

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There are 7 strands in M sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	84	86	first strand
Strand 2	V	143	146	anti-parallel
Strand 3	V	107	111	anti-parallel
Strand 4	V	116	122	anti-parallel
Strand 5	V	126	131	anti-parallel
Strand 6	V	94	99	anti-parallel
Strand 7	V	85	91	anti-parallel

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There are 2 strands in N sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	152	155	first strand
Strand 2	V	181	184	anti-parallel

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There are 3 strands in O sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	404	408	first strand
Strand 2	V	221	225	parallel
Strand 3	V	382	384	parallel

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There are 4 strands in P sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	285	290	first strand
Strand 2	V	255	262	parallel
Strand 3	V	319	325	parallel
Strand 4	V	376	381	parallel

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There are 7 strands in Q sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	37	39	first strand
Strand 2	X	101	104	anti-parallel
Strand 3	X	62	65	anti-parallel
Strand 4	X	73	79	anti-parallel
Strand 5	X	84	89	anti-parallel
Strand 6	X	47	51	anti-parallel
Strand 7	X	39	44	anti-parallel

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There are 2 strands in R sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	110	113	first strand
Strand 2	X	139	142	anti-parallel

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There are 6 strands in S sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	360	363	first strand
Strand 2	X	178	183	parallel
Strand 3	X	332	340	parallel
Strand 4	X	279	285	parallel
Strand 5	X	207	213	parallel
Strand 6	X	244	249	parallel

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There are 2 strands in T sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	559	561	first strand
Strand 2	X	567	569	anti-parallel

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There are 6 strands in U sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	38	44	first strand
Strand 2	Y	47	52	anti-parallel
Strand 3	Y	84	89	anti-parallel
Strand 4	Y	72	79	anti-parallel
Strand 5	Y	62	65	anti-parallel
Strand 6	Y	102	104	anti-parallel

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There are 6 strands in V sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	360	363	first strand
Strand 2	Y	178	183	parallel
Strand 3	Y	332	340	parallel
Strand 4	Y	279	285	parallel
Strand 5	Y	207	213	parallel
Strand 6	Y	244	249	parallel

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There are 6 strands in W sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	38	44	first strand
Strand 2	Z	47	52	anti-parallel
Strand 3	Z	84	89	anti-parallel
Strand 4	Z	73	79	anti-parallel
Strand 5	Z	62	65	anti-parallel
Strand 6	Z	102	104	anti-parallel

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There are 2 strands in X sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	110	113	first strand
Strand 2	Z	139	142	anti-parallel

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There are 6 strands in Y sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	360	362	first strand
Strand 2	Z	178	181	parallel
Strand 3	Z	332	338	parallel
Strand 4	Z	279	285	parallel
Strand 5	Z	208	215	parallel
Strand 6	Z	244	250	parallel

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There are 2 strands in Z sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	559	561	first strand
Strand 2	Z	567	569	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RDP

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RDP