Analysis of interatomic Contacts of Structural Units in PDB entry:
6RDV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RDV entry

There are 20 chains in PDB entry 6RDV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 54	ALA 127
B	SER 54	ALA 127
C	SER 54	ALA 127
D	SER 54	ALA 127
E	SER 54	ALA 127
F	SER 54	ALA 127
G	SER 54	ALA 127
H	SER 54	ALA 127
I	SER 54	ALA 127
J	SER 54	ALA 127
P	LEU 37	LYS 150
Q	ALA 3	ASN 74
R	GLU 23	ALA 199
S	SER 39	MET 315
T	GLY 85	ALA 562
U	ALA 40	ALA 562
V	LYS 43	ALA 562
X	PRO 33	ASN 574
Y	ASP 36	SER 556
Z	ALA 37	ASN 574

There are182 helices in PDB entry 6RDV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	68	Right-handed alpha
Helix 2	AA2	A	70	92	Right-handed alpha
Helix 3	AA3	A	93	96	Right-handed 310
Helix 4	AA4	A	97	126	Right-handed alpha
Helix 5	AA5	B	55	68	Right-handed alpha
Helix 6	AA6	B	69	92	Right-handed alpha
Helix 7	AA7	B	93	96	Right-handed 310
Helix 8	AA8	B	98	126	Right-handed alpha
Helix 9	AA9	C	55	68	Right-handed alpha
Helix 10	AB1	C	70	92	Right-handed alpha
Helix 11	AB2	C	93	96	Right-handed 310
Helix 12	AB3	C	99	126	Right-handed alpha
Helix 13	AB4	D	55	66	Right-handed alpha
Helix 14	AB5	D	67	69	Right-handed 310
Helix 15	AB6	D	70	92	Right-handed alpha
Helix 16	AB7	D	95	126	Right-handed alpha
Helix 17	AB8	E	55	68	Right-handed alpha
Helix 18	AB9	E	70	90	Right-handed alpha
Helix 19	AC1	E	97	126	Right-handed alpha
Helix 20	AC2	F	55	66	Right-handed alpha
Helix 21	AC3	F	69	92	Right-handed alpha
Helix 22	AC4	F	95	124	Right-handed alpha
Helix 23	AC5	G	55	68	Right-handed alpha
Helix 24	AC6	G	71	92	Right-handed alpha
Helix 25	AC7	G	95	121	Right-handed alpha
Helix 26	AC8	H	55	67	Right-handed alpha
Helix 27	AC9	H	70	92	Right-handed alpha
Helix 28	AD1	H	95	124	Right-handed alpha
Helix 29	AD2	I	55	66	Right-handed alpha
Helix 30	AD3	I	69	92	Right-handed alpha
Helix 31	AD4	I	95	126	Right-handed alpha
Helix 32	AD5	J	55	68	Right-handed alpha
Helix 33	AD6	J	70	89	Right-handed alpha
Helix 34	AD7	J	95	125	Right-handed alpha
Helix 35	AD8	P	52	63	Right-handed alpha
Helix 36	AD9	P	66	84	Right-handed alpha
Helix 37	AE1	P	84	93	Right-handed alpha
Helix 38	AE2	P	97	105	Right-handed alpha
Helix 39	AE3	P	117	128	Right-handed alpha
Helix 40	AE4	P	130	132	Right-handed 310
Helix 41	AE5	P	133	146	Right-handed alpha
Helix 42	AE6	Q	7	12	Right-handed alpha
Helix 43	AE7	Q	15	29	Right-handed alpha
Helix 44	AE8	Q	32	37	Right-handed alpha
Helix 45	AE9	Q	40	44	Right-handed 310
Helix 46	AF1	R	31	38	Right-handed alpha
Helix 47	AF2	R	50	55	Right-handed 310
Helix 48	AF3	R	153	155	Right-handed 310
Helix 49	AF4	R	158	168	Right-handed alpha
Helix 50	AF5	R	174	197	Right-handed alpha
Helix 51	AF6	S	41	71	Right-handed alpha
Helix 52	AF7	S	72	79	Right-handed alpha
Helix 53	AF8	S	81	89	Right-handed alpha
Helix 54	AF9	S	114	128	Right-handed alpha
Helix 55	AG1	S	143	154	Right-handed alpha
Helix 56	AG2	S	171	184	Right-handed alpha
Helix 57	AG3	S	216	221	Right-handed alpha
Helix 58	AG4	S	227	231	Right-handed 310
Helix 59	AG5	S	238	241	Right-handed 310
Helix 60	AG6	S	242	274	Right-handed alpha
Helix 61	AG7	S	275	313	Right-handed alpha
Helix 62	AG8	T	134	138	Right-handed 310
Helix 63	AG9	T	156	160	Right-handed 310
Helix 64	AH1	T	206	213	Right-handed alpha
Helix 65	AH2	T	230	247	Right-handed alpha
Helix 66	AH3	T	269	280	Right-handed alpha
Helix 67	AH4	T	281	284	Right-handed 310
Helix 68	AH5	T	295	300	Right-handed alpha
Helix 69	AH6	T	301	316	Right-handed alpha
Helix 70	AH7	T	326	341	Right-handed alpha
Helix 71	AH8	T	351	353	Right-handed 310
Helix 72	AH9	T	354	363	Right-handed alpha
Helix 73	AI1	T	392	402	Right-handed alpha
Helix 74	AI2	T	409	415	Right-handed alpha
Helix 75	AI3	T	436	441	Right-handed alpha
Helix 76	AI4	T	445	460	Right-handed alpha
Helix 77	AI5	T	469	484	Right-handed alpha
Helix 78	AI6	T	494	506	Right-handed alpha
Helix 79	AI7	T	513	517	Right-handed 310
Helix 80	AI8	T	520	527	Right-handed alpha
Helix 81	AI9	T	530	540	Right-handed alpha
Helix 82	AJ1	T	543	554	Right-handed alpha
Helix 83	AJ2	U	41	46	Right-handed alpha
Helix 84	AJ3	U	47	49	Right-handed 310
Helix 85	AJ4	U	58	72	Right-handed alpha
Helix 86	AJ5	U	134	138	Right-handed 310
Helix 87	AJ6	U	206	212	Right-handed alpha
Helix 88	AJ7	U	230	247	Right-handed alpha
Helix 89	AJ8	U	265	279	Right-handed alpha
Helix 90	AJ9	U	280	283	Right-handed 310
Helix 91	AK1	U	295	316	Right-handed alpha
Helix 92	AK2	U	329	341	Right-handed alpha
Helix 93	AK3	U	353	363	Right-handed alpha
Helix 94	AK4	U	392	400	Right-handed alpha
Helix 95	AK5	U	409	415	Right-handed alpha
Helix 96	AK6	U	436	460	Right-handed alpha
Helix 97	AK7	U	470	485	Right-handed alpha
Helix 98	AK8	U	494	506	Right-handed alpha
Helix 99	AK9	U	516	528	Right-handed alpha
Helix 100	AL1	U	529	540	Right-handed alpha
Helix 101	AL2	U	543	554	Right-handed alpha
Helix 102	AL3	V	45	49	Right-handed 310
Helix 103	AL4	V	58	67	Right-handed alpha
Helix 104	AL5	V	68	74	Right-handed 310
Helix 105	AL6	V	156	160	Right-handed 310
Helix 106	AL7	V	206	213	Right-handed alpha
Helix 107	AL8	V	230	247	Right-handed alpha
Helix 108	AL9	V	265	279	Right-handed alpha
Helix 109	AM1	V	280	283	Right-handed 310
Helix 110	AM2	V	295	315	Right-handed alpha
Helix 111	AM3	V	326	341	Right-handed alpha
Helix 112	AM4	V	353	363	Right-handed alpha
Helix 113	AM5	V	392	402	Right-handed alpha
Helix 114	AM6	V	409	414	Right-handed alpha
Helix 115	AM7	V	430	435	Right-handed 310
Helix 116	AM8	V	439	457	Right-handed alpha
Helix 117	AM9	V	469	484	Right-handed alpha
Helix 118	AN1	V	493	507	Right-handed alpha
Helix 119	AN2	V	513	515	Right-handed 310
Helix 120	AN3	V	516	521	Right-handed alpha
Helix 121	AN4	V	521	526	Right-handed alpha
Helix 122	AN5	V	530	540	Right-handed alpha
Helix 123	AN6	V	543	554	Right-handed alpha
Helix 124	AN7	X	114	118	Right-handed 310
Helix 125	AN8	X	149	153	Right-handed 310
Helix 126	AN9	X	164	171	Right-handed alpha
Helix 127	AO1	X	188	204	Right-handed alpha
Helix 128	AO2	X	216	229	Right-handed alpha
Helix 129	AO3	X	235	242	Right-handed 310
Helix 130	AO4	X	254	260	Right-handed alpha
Helix 131	AO5	X	260	275	Right-handed alpha
Helix 132	AO6	X	287	299	Right-handed alpha
Helix 133	AO7	X	313	323	Right-handed alpha
Helix 134	AO8	X	348	353	Right-handed alpha
Helix 135	AO9	X	354	358	Right-handed 310
Helix 136	AP1	X	365	370	Right-handed alpha
Helix 137	AP2	X	393	420	Right-handed alpha
Helix 138	AP3	X	421	425	Right-handed 310
Helix 139	AP4	X	426	443	Right-handed alpha
Helix 140	AP5	X	450	455	Right-handed alpha
Helix 141	AP6	X	462	476	Right-handed alpha
Helix 142	AP7	X	491	505	Right-handed alpha
Helix 143	AP8	X	526	533	Right-handed alpha
Helix 144	AP9	Y	114	118	Right-handed 310
Helix 145	AQ1	Y	164	171	Right-handed alpha
Helix 146	AQ2	Y	188	201	Right-handed alpha
Helix 147	AQ3	Y	216	230	Right-handed alpha
Helix 148	AQ4	Y	235	242	Right-handed 310
Helix 149	AQ5	Y	254	259	Right-handed alpha
Helix 150	AQ6	Y	260	275	Right-handed alpha
Helix 151	AQ7	Y	287	298	Right-handed alpha
Helix 152	AQ8	Y	313	323	Right-handed alpha
Helix 153	AQ9	Y	348	355	Right-handed alpha
Helix 154	AR1	Y	356	358	Right-handed 310
Helix 155	AR2	Y	365	370	Right-handed alpha
Helix 156	AR3	Y	393	421	Right-handed alpha
Helix 157	AR4	Y	428	444	Right-handed alpha
Helix 158	AR5	Y	462	475	Right-handed alpha
Helix 159	AR6	Y	482	486	Right-handed 310
Helix 160	AR7	Y	491	508	Right-handed alpha
Helix 161	AR8	Y	526	533	Right-handed alpha
Helix 162	AR9	Y	544	555	Right-handed alpha
Helix 163	AS1	Z	114	118	Right-handed 310
Helix 164	AS2	Z	165	170	Right-handed alpha
Helix 165	AS3	Z	188	203	Right-handed alpha
Helix 166	AS4	Z	216	229	Right-handed alpha
Helix 167	AS5	Z	236	242	Right-handed 310
Helix 168	AS6	Z	254	260	Right-handed alpha
Helix 169	AS7	Z	260	275	Right-handed alpha
Helix 170	AS8	Z	286	301	Right-handed alpha
Helix 171	AS9	Z	313	323	Right-handed alpha
Helix 172	AT1	Z	348	357	Right-handed alpha
Helix 173	AT2	Z	365	371	Right-handed alpha
Helix 174	AT3	Z	388	393	Right-handed alpha
Helix 175	AT4	Z	393	411	Right-handed alpha
Helix 176	AT5	Z	421	425	Right-handed 310
Helix 177	AT6	Z	426	440	Right-handed alpha
Helix 178	AT7	Z	447	451	Right-handed 310
Helix 179	AT8	Z	462	476	Right-handed alpha
Helix 180	AT9	Z	482	486	Right-handed 310
Helix 181	AU1	Z	491	505	Right-handed alpha
Helix 182	AU2	Z	526	533	Right-handed alpha

There are 26 sheets in PDB entry 6RDV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	61	65	first strand
Strand 2	Q	45	49	anti-parallel
Strand 3	S	158	163	anti-parallel
Strand 4	S	136	142	parallel
Strand 5	S	99	105	parallel
Strand 6	S	189	197	parallel
Strand 7	S	203	211	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	85	86	first strand
Strand 2	R	70	75	anti-parallel
Strand 3	R	142	145	parallel
Strand 4	R	133	136	anti-parallel
Strand 5	R	107	110	anti-parallel
Strand 6	S	232	233	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	97	100	first strand
Strand 2	R	88	92	anti-parallel
Strand 3	R	115	119	anti-parallel
Strand 4	R	124	129	anti-parallel
Strand 5	R	149	151	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	86	91	first strand
Strand 2	T	94	98	anti-parallel
Strand 3	T	126	131	anti-parallel
Strand 4	T	116	122	anti-parallel
Strand 5	T	107	111	anti-parallel
Strand 6	T	144	150	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	152	155	first strand
Strand 2	T	181	184	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	163	164	first strand
Strand 2	T	286	290	parallel
Strand 3	T	255	262	parallel
Strand 4	T	319	325	parallel
Strand 5	T	376	379	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	382	384	first strand
Strand 2	T	221	225	parallel
Strand 3	T	404	408	parallel

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There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	107	111	first strand
Strand 2	U	143	150	anti-parallel
Strand 3	U	85	91	anti-parallel
Strand 4	U	94	99	anti-parallel
Strand 5	U	127	131	anti-parallel
Strand 6	U	117	122	anti-parallel
Strand 7	X	37	44	anti-parallel
Strand 8	X	101	104	anti-parallel
Strand 9	X	62	65	anti-parallel
Strand 10	X	73	79	anti-parallel
Strand 11	X	84	89	anti-parallel
Strand 12	X	47	51	anti-parallel
Strand 13	X	37	44	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	152	155	first strand
Strand 2	U	181	184	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	163	164	first strand
Strand 2	U	285	290	parallel
Strand 3	U	255	262	parallel
Strand 4	U	319	325	parallel
Strand 5	U	376	384	parallel
Strand 6	U	221	225	parallel
Strand 7	U	404	408	parallel
Strand 8	U	427	428	anti-parallel

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There are 14 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	116	122	first strand
Strand 2	V	107	111	anti-parallel
Strand 3	V	143	150	anti-parallel
Strand 4	V	84	89	anti-parallel
Strand 5	V	94	99	anti-parallel
Strand 6	V	127	131	anti-parallel
Strand 7	V	116	122	anti-parallel
Strand 8	Z	38	44	anti-parallel
Strand 9	Z	101	104	anti-parallel
Strand 10	Z	62	65	anti-parallel
Strand 11	Z	73	79	anti-parallel
Strand 12	Z	84	89	anti-parallel
Strand 13	Z	47	52	anti-parallel
Strand 14	Z	38	44	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	152	155	first strand
Strand 2	V	181	184	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	163	164	first strand
Strand 2	V	285	290	parallel
Strand 3	V	255	262	parallel
Strand 4	V	319	325	parallel
Strand 5	V	376	384	parallel
Strand 6	V	221	225	parallel
Strand 7	V	404	408	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	201	202	first strand
Strand 2	V	215	216	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	110	113	first strand
Strand 2	X	139	142	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	121	122	first strand
Strand 2	X	244	249	parallel
Strand 3	X	207	213	parallel
Strand 4	X	279	285	parallel
Strand 5	X	332	340	parallel
Strand 6	X	178	183	parallel
Strand 7	X	360	363	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	159	160	first strand
Strand 2	X	173	174	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	559	561	first strand
Strand 2	X	567	569	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	38	44	first strand
Strand 2	Y	47	51	anti-parallel
Strand 3	Y	84	89	anti-parallel
Strand 4	Y	72	79	anti-parallel
Strand 5	Y	62	65	anti-parallel
Strand 6	Y	101	104	anti-parallel
Strand 7	Y	38	44	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	110	111	first strand
Strand 2	Y	141	142	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	121	122	first strand
Strand 2	Y	244	249	parallel
Strand 3	Y	207	213	parallel
Strand 4	Y	279	285	parallel
Strand 5	Y	332	340	parallel
Strand 6	Y	178	183	parallel
Strand 7	Y	360	363	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	159	160	first strand
Strand 2	Y	173	174	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	110	113	first strand
Strand 2	Z	139	142	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	121	122	first strand
Strand 2	Z	244	250	parallel
Strand 3	Z	208	215	parallel
Strand 4	Z	279	284	parallel
Strand 5	Z	332	338	parallel
Strand 6	Z	178	181	parallel
Strand 7	Z	358	362	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	159	160	first strand
Strand 2	Z	173	174	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	559	561	first strand
Strand 2	Z	567	569	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RDV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RDV