Analysis of interatomic Contacts of Structural Units in PDB entry:
6RDY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RDY entry

There are 20 chains in PDB entry 6RDY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 54	ALA 127
B	SER 54	ALA 127
C	SER 54	ALA 127
D	SER 54	ALA 127
E	SER 54	ALA 127
F	SER 54	ALA 127
G	SER 54	ALA 127
H	SER 54	ALA 127
I	SER 54	ALA 127
J	SER 54	ALA 127
P	LEU 37	LYS 150
Q	ALA 3	ASN 74
R	GLU 23	ALA 199
S	SER 39	MET 315
T	GLY 85	ALA 562
U	ALA 40	ALA 562
V	LYS 43	ALA 562
X	PRO 33	ASN 574
Y	ASP 36	SER 556
Z	ALA 37	ASN 574

There are182 helices in PDB entry 6RDY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	68	Right-handed alpha
Helix 2	AA2	A	70	92	Right-handed alpha
Helix 3	AA3	A	93	96	Right-handed 310
Helix 4	AA4	A	97	111	Right-handed alpha
Helix 5	AA5	A	111	127	Right-handed alpha
Helix 6	AA6	B	55	68	Right-handed alpha
Helix 7	AA7	B	69	92	Right-handed alpha
Helix 8	AA8	B	95	127	Right-handed alpha
Helix 9	AA9	C	55	68	Right-handed alpha
Helix 10	AB1	C	69	90	Right-handed alpha
Helix 11	AB2	C	92	94	Right-handed 310
Helix 12	AB3	C	95	126	Right-handed alpha
Helix 13	AB4	D	55	66	Right-handed alpha
Helix 14	AB5	D	69	92	Right-handed alpha
Helix 15	AB6	D	95	127	Right-handed alpha
Helix 16	AB7	E	55	66	Right-handed alpha
Helix 17	AB8	E	70	90	Right-handed alpha
Helix 18	AB9	E	92	96	Right-handed 310
Helix 19	AC1	E	97	126	Right-handed alpha
Helix 20	AC2	F	55	68	Right-handed alpha
Helix 21	AC3	F	69	92	Right-handed alpha
Helix 22	AC4	F	95	127	Right-handed alpha
Helix 23	AC5	G	55	68	Right-handed alpha
Helix 24	AC6	G	70	92	Right-handed alpha
Helix 25	AC7	G	95	126	Right-handed alpha
Helix 26	AC8	H	55	67	Right-handed alpha
Helix 27	AC9	H	69	92	Right-handed alpha
Helix 28	AD1	H	95	126	Right-handed alpha
Helix 29	AD2	I	55	67	Right-handed alpha
Helix 30	AD3	I	69	92	Right-handed alpha
Helix 31	AD4	I	93	96	Right-handed 310
Helix 32	AD5	I	97	126	Right-handed alpha
Helix 33	AD6	J	55	68	Right-handed alpha
Helix 34	AD7	J	70	90	Right-handed alpha
Helix 35	AD8	J	92	94	Right-handed 310
Helix 36	AD9	J	95	127	Right-handed alpha
Helix 37	AE1	P	50	65	Right-handed alpha
Helix 38	AE2	P	66	84	Right-handed alpha
Helix 39	AE3	P	88	93	Right-handed alpha
Helix 40	AE4	P	97	102	Right-handed alpha
Helix 41	AE5	P	103	108	Right-handed 310
Helix 42	AE6	P	117	129	Right-handed alpha
Helix 43	AE7	P	130	132	Right-handed 310
Helix 44	AE8	P	133	144	Right-handed alpha
Helix 45	AE9	Q	7	12	Right-handed alpha
Helix 46	AF1	Q	15	29	Right-handed alpha
Helix 47	AF2	Q	32	40	Right-handed alpha
Helix 48	AF3	R	31	41	Right-handed alpha
Helix 49	AF4	R	50	55	Right-handed 310
Helix 50	AF5	R	153	155	Right-handed 310
Helix 51	AF6	R	158	168	Right-handed alpha
Helix 52	AF7	R	174	197	Right-handed alpha
Helix 53	AF8	S	41	69	Right-handed alpha
Helix 54	AF9	S	81	89	Right-handed alpha
Helix 55	AG1	S	115	128	Right-handed alpha
Helix 56	AG2	S	143	151	Right-handed alpha
Helix 57	AG3	S	171	183	Right-handed alpha
Helix 58	AG4	S	212	222	Right-handed alpha
Helix 59	AG5	S	238	241	Right-handed 310
Helix 60	AG6	S	242	312	Right-handed alpha
Helix 61	AG7	T	134	138	Right-handed 310
Helix 62	AG8	T	156	160	Right-handed 310
Helix 63	AG9	T	206	211	Right-handed alpha
Helix 64	AH1	T	230	247	Right-handed alpha
Helix 65	AH2	T	265	280	Right-handed alpha
Helix 66	AH3	T	281	285	Right-handed 310
Helix 67	AH4	T	295	311	Right-handed alpha
Helix 68	AH5	T	311	316	Right-handed alpha
Helix 69	AH6	T	327	341	Right-handed alpha
Helix 70	AH7	T	353	363	Right-handed alpha
Helix 71	AH8	T	392	400	Right-handed alpha
Helix 72	AH9	T	409	415	Right-handed alpha
Helix 73	AI1	T	430	435	Right-handed 310
Helix 74	AI2	T	436	441	Right-handed alpha
Helix 75	AI3	T	445	450	Right-handed alpha
Helix 76	AI4	T	450	460	Right-handed alpha
Helix 77	AI5	T	469	484	Right-handed alpha
Helix 78	AI6	T	494	499	Right-handed alpha
Helix 79	AI7	T	501	506	Right-handed alpha
Helix 80	AI8	T	517	527	Right-handed alpha
Helix 81	AI9	T	530	540	Right-handed alpha
Helix 82	AJ1	T	543	552	Right-handed alpha
Helix 83	AJ2	U	41	47	Right-handed alpha
Helix 84	AJ3	U	48	50	Right-handed 310
Helix 85	AJ4	U	58	71	Right-handed alpha
Helix 86	AJ5	U	134	138	Right-handed 310
Helix 87	AJ6	U	156	160	Right-handed 310
Helix 88	AJ7	U	206	213	Right-handed alpha
Helix 89	AJ8	U	230	247	Right-handed alpha
Helix 90	AJ9	U	265	279	Right-handed alpha
Helix 91	AK1	U	280	283	Right-handed 310
Helix 92	AK2	U	295	315	Right-handed alpha
Helix 93	AK3	U	326	340	Right-handed alpha
Helix 94	AK4	U	353	363	Right-handed alpha
Helix 95	AK5	U	392	400	Right-handed alpha
Helix 96	AK6	U	409	415	Right-handed alpha
Helix 97	AK7	U	436	460	Right-handed alpha
Helix 98	AK8	U	470	485	Right-handed alpha
Helix 99	AK9	U	493	496	Right-handed 310
Helix 100	AL1	U	497	506	Right-handed alpha
Helix 101	AL2	U	516	528	Right-handed alpha
Helix 102	AL3	U	530	540	Right-handed alpha
Helix 103	AL4	U	543	554	Right-handed alpha
Helix 104	AL5	V	45	49	Right-handed 310
Helix 105	AL6	V	58	67	Right-handed alpha
Helix 106	AL7	V	68	70	Right-handed 310
Helix 107	AL8	V	134	138	Right-handed 310
Helix 108	AL9	V	206	213	Right-handed alpha
Helix 109	AM1	V	230	247	Right-handed alpha
Helix 110	AM2	V	250	253	Right-handed 310
Helix 111	AM3	V	265	279	Right-handed alpha
Helix 112	AM4	V	295	316	Right-handed alpha
Helix 113	AM5	V	326	341	Right-handed alpha
Helix 114	AM6	V	353	363	Right-handed alpha
Helix 115	AM7	V	369	373	Right-handed 310
Helix 116	AM8	V	392	402	Right-handed alpha
Helix 117	AM9	V	430	435	Right-handed 310
Helix 118	AN1	V	438	456	Right-handed alpha
Helix 119	AN2	V	469	482	Right-handed alpha
Helix 120	AN3	V	493	506	Right-handed alpha
Helix 121	AN4	V	513	517	Right-handed 310
Helix 122	AN5	V	521	526	Right-handed alpha
Helix 123	AN6	V	530	540	Right-handed alpha
Helix 124	AN7	V	543	554	Right-handed alpha
Helix 125	AN8	X	114	118	Right-handed 310
Helix 126	AN9	X	149	153	Right-handed 310
Helix 127	AO1	X	164	171	Right-handed alpha
Helix 128	AO2	X	188	204	Right-handed alpha
Helix 129	AO3	X	216	230	Right-handed alpha
Helix 130	AO4	X	238	242	Right-handed 310
Helix 131	AO5	X	254	260	Right-handed alpha
Helix 132	AO6	X	260	275	Right-handed alpha
Helix 133	AO7	X	287	298	Right-handed alpha
Helix 134	AO8	X	313	323	Right-handed alpha
Helix 135	AO9	X	348	353	Right-handed alpha
Helix 136	AP1	X	365	370	Right-handed alpha
Helix 137	AP2	X	388	421	Right-handed alpha
Helix 138	AP3	X	422	425	Right-handed 310
Helix 139	AP4	X	426	442	Right-handed alpha
Helix 140	AP5	X	450	455	Right-handed alpha
Helix 141	AP6	X	462	476	Right-handed alpha
Helix 142	AP7	X	483	487	Right-handed 310
Helix 143	AP8	X	491	505	Right-handed alpha
Helix 144	AP9	X	526	533	Right-handed alpha
Helix 145	AQ1	Y	114	118	Right-handed 310
Helix 146	AQ2	Y	164	171	Right-handed alpha
Helix 147	AQ3	Y	188	201	Right-handed alpha
Helix 148	AQ4	Y	216	230	Right-handed alpha
Helix 149	AQ5	Y	235	242	Right-handed 310
Helix 150	AQ6	Y	254	259	Right-handed alpha
Helix 151	AQ7	Y	260	275	Right-handed alpha
Helix 152	AQ8	Y	287	297	Right-handed alpha
Helix 153	AQ9	Y	313	323	Right-handed alpha
Helix 154	AR1	Y	348	353	Right-handed alpha
Helix 155	AR2	Y	354	358	Right-handed 310
Helix 156	AR3	Y	366	371	Right-handed alpha
Helix 157	AR4	Y	393	421	Right-handed alpha
Helix 158	AR5	Y	428	443	Right-handed alpha
Helix 159	AR6	Y	448	452	Right-handed 310
Helix 160	AR7	Y	462	474	Right-handed alpha
Helix 161	AR8	Y	491	508	Right-handed alpha
Helix 162	AR9	Y	526	532	Right-handed alpha
Helix 163	AS1	Y	544	555	Right-handed alpha
Helix 164	AS2	Z	114	118	Right-handed 310
Helix 165	AS3	Z	165	170	Right-handed alpha
Helix 166	AS4	Z	188	204	Right-handed alpha
Helix 167	AS5	Z	216	229	Right-handed alpha
Helix 168	AS6	Z	235	242	Right-handed 310
Helix 169	AS7	Z	254	259	Right-handed alpha
Helix 170	AS8	Z	260	275	Right-handed alpha
Helix 171	AS9	Z	286	301	Right-handed alpha
Helix 172	AT1	Z	313	323	Right-handed alpha
Helix 173	AT2	Z	348	355	Right-handed alpha
Helix 174	AT3	Z	367	372	Right-handed 310
Helix 175	AT4	Z	388	393	Right-handed alpha
Helix 176	AT5	Z	393	412	Right-handed alpha
Helix 177	AT6	Z	426	440	Right-handed alpha
Helix 178	AT7	Z	450	455	Right-handed alpha
Helix 179	AT8	Z	462	476	Right-handed alpha
Helix 180	AT9	Z	482	486	Right-handed 310
Helix 181	AU1	Z	491	502	Right-handed alpha
Helix 182	AU2	Z	526	532	Right-handed alpha

There are 27 sheets in PDB entry 6RDY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	62	63	first strand
Strand 2	Q	47	51	anti-parallel
Strand 3	S	158	163	anti-parallel
Strand 4	S	136	142	parallel
Strand 5	S	99	105	parallel
Strand 6	S	189	197	parallel
Strand 7	S	203	211	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	85	86	first strand
Strand 2	R	70	75	anti-parallel
Strand 3	R	142	146	parallel
Strand 4	R	132	136	anti-parallel
Strand 5	R	107	111	anti-parallel
Strand 6	S	232	234	parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	96	100	first strand
Strand 2	R	88	93	anti-parallel
Strand 3	R	115	119	anti-parallel
Strand 4	R	124	129	anti-parallel
Strand 5	R	149	151	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	86	91	first strand
Strand 2	T	94	98	anti-parallel
Strand 3	T	126	132	anti-parallel
Strand 4	T	116	119	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	107	111	first strand
Strand 2	T	144	150	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	121	122	first strand
Strand 2	Y	38	44	anti-parallel
Strand 3	Y	101	104	anti-parallel
Strand 4	Y	62	65	anti-parallel
Strand 5	Y	72	79	anti-parallel
Strand 6	Y	84	89	anti-parallel
Strand 7	Y	47	51	anti-parallel
Strand 8	Y	38	44	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	152	155	first strand
Strand 2	T	181	184	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	163	164	first strand
Strand 2	T	286	290	parallel
Strand 3	T	255	262	parallel
Strand 4	T	319	325	parallel
Strand 5	T	376	379	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	T	382	384	first strand
Strand 2	T	221	225	parallel
Strand 3	T	404	407	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	62	65	first strand
Strand 2	X	72	79	anti-parallel
Strand 3	X	84	89	anti-parallel
Strand 4	X	47	51	anti-parallel
Strand 5	X	37	44	anti-parallel
Strand 6	U	119	122	anti-parallel
Strand 7	X	101	103	first strand

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There are 12 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	62	65	first strand
Strand 2	X	72	79	anti-parallel
Strand 3	X	84	89	anti-parallel
Strand 4	X	47	51	anti-parallel
Strand 5	X	37	44	anti-parallel
Strand 6	U	126	130	first strand
Strand 7	U	94	99	anti-parallel
Strand 8	U	85	91	anti-parallel
Strand 9	U	143	150	anti-parallel
Strand 10	U	107	110	anti-parallel
Strand 11	U	119	122	anti-parallel
Strand 12	X	101	103	first strand

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	152	155	first strand
Strand 2	U	181	184	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	163	164	first strand
Strand 2	U	285	290	parallel
Strand 3	U	255	262	parallel
Strand 4	U	319	325	parallel
Strand 5	U	376	384	parallel
Strand 6	U	221	225	parallel
Strand 7	U	404	408	parallel

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There are 14 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	116	122	first strand
Strand 2	V	107	111	anti-parallel
Strand 3	V	143	150	anti-parallel
Strand 4	V	84	89	anti-parallel
Strand 5	V	94	98	anti-parallel
Strand 6	V	126	131	anti-parallel
Strand 7	V	116	122	anti-parallel
Strand 8	Z	38	44	anti-parallel
Strand 9	Z	101	104	anti-parallel
Strand 10	Z	62	65	anti-parallel
Strand 11	Z	72	79	anti-parallel
Strand 12	Z	84	89	anti-parallel
Strand 13	Z	47	51	anti-parallel
Strand 14	Z	38	44	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	152	155	first strand
Strand 2	V	181	184	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	V	163	164	first strand
Strand 2	V	286	290	parallel
Strand 3	V	255	262	parallel
Strand 4	V	319	325	parallel
Strand 5	V	376	384	parallel
Strand 6	V	223	225	parallel
Strand 7	V	406	408	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	110	113	first strand
Strand 2	X	139	142	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	121	122	first strand
Strand 2	X	244	248	parallel
Strand 3	X	208	212	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	159	160	first strand
Strand 2	X	173	174	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	279	282	first strand
Strand 2	X	332	340	parallel
Strand 3	X	179	183	parallel
Strand 4	X	360	363	parallel
Strand 5	X	383	384	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	X	559	561	first strand
Strand 2	X	567	569	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	110	113	first strand
Strand 2	Y	138	142	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	121	122	first strand
Strand 2	Y	245	249	parallel
Strand 3	Y	207	213	parallel
Strand 4	Y	280	285	parallel
Strand 5	Y	333	340	parallel
Strand 6	Y	178	183	parallel
Strand 7	Y	360	362	parallel
Strand 8	Y	383	384	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Y	159	160	first strand
Strand 2	Y	173	174	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	110	113	first strand
Strand 2	Z	139	142	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	178	181	first strand
Strand 2	Z	332	338	parallel
Strand 3	Z	279	284	parallel
Strand 4	Z	208	215	parallel
Strand 5	Z	244	250	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Z	559	561	first strand
Strand 2	Z	567	569	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RDY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RDY