Analysis of interatomic Contacts of Structural Units in PDB entry:
6RF0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RF0 entry

There are 5 chains in PDB entry 6RF0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4GLU 277
B
 GLN 3GLU 277
C
 GLU 4ALA 278
D
 GLU 4ALA 278
E
 GLN 3GLU 277
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 69 helices in PDB entry 6RF0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 17Right-handed alpha
Helix 2
AA2
A
21 50Right-handed alpha
Helix 3
AA3
A
51 53Right-handed 310
Helix 4
AA4
A
54 56Right-handed 310
Helix 5
AA5
A
57 85Right-handed alpha
Helix 6
AA6
A
99 102Right-handed 310
Helix 7
AA7
A
106 124Right-handed alpha
Helix 8
AA8
A
125 127Right-handed 310
Helix 9
AA9
A
134 157Right-handed alpha
Helix 10
AB1
A
158 160Right-handed 310
Helix 11
AB2
A
163 194Right-handed alpha
Helix 12
AB3
A
197 223Right-handed alpha
Helix 13
AB4
A
224 227Right-handed 310
Helix 14
AB5
A
236 270Right-handed alpha
Helix 15
AB6
B
9 17Right-handed alpha
Helix 16
AB7
B
21 50Right-handed alpha
Helix 17
AB8
B
51 53Right-handed 310
Helix 18
AB9
B
54 56Right-handed 310
Helix 19
AC1
B
57 85Right-handed alpha
Helix 20
AC2
B
99 102Right-handed 310
Helix 21
AC3
B
106 124Right-handed alpha
Helix 22
AC4
B
125 127Right-handed 310
Helix 23
AC5
B
134 157Right-handed alpha
Helix 24
AC6
B
158 160Right-handed 310
Helix 25
AC7
B
163 194Right-handed alpha
Helix 26
AC8
B
197 223Right-handed alpha
Helix 27
AC9
B
224 227Right-handed 310
Helix 28
AD1
B
236 269Right-handed alpha
Helix 29
AD2
C
9 17Right-handed alpha
Helix 30
AD3
C
21 50Right-handed alpha
Helix 31
AD4
C
51 53Right-handed 310
Helix 32
AD5
C
54 56Right-handed 310
Helix 33
AD6
C
57 85Right-handed alpha
Helix 34
AD7
C
99 102Right-handed 310
Helix 35
AD8
C
106 124Right-handed alpha
Helix 36
AD9
C
125 127Right-handed 310
Helix 37
AE1
C
134 158Right-handed alpha
Helix 38
AE2
C
163 194Right-handed alpha
Helix 39
AE3
C
197 223Right-handed alpha
Helix 40
AE4
C
224 227Right-handed 310
Helix 41
AE5
C
236 270Right-handed alpha
Helix 42
AE6
D
10 17Right-handed alpha
Helix 43
AE7
D
21 50Right-handed alpha
Helix 44
AE8
D
51 53Right-handed 310
Helix 45
AE9
D
54 56Right-handed 310
Helix 46
AF1
D
57 85Right-handed alpha
Helix 47
AF2
D
99 102Right-handed 310
Helix 48
AF3
D
106 124Right-handed alpha
Helix 49
AF4
D
125 127Right-handed 310
Helix 50
AF5
D
134 157Right-handed alpha
Helix 51
AF6
D
158 160Right-handed 310
Helix 52
AF7
D
163 194Right-handed alpha
Helix 53
AF8
D
197 223Right-handed alpha
Helix 54
AF9
D
224 227Right-handed 310
Helix 55
AG1
D
236 269Right-handed alpha
Helix 56
AG2
E
10 17Right-handed alpha
Helix 57
AG3
E
21 50Right-handed alpha
Helix 58
AG4
E
51 53Right-handed 310
Helix 59
AG5
E
54 56Right-handed 310
Helix 60
AG6
E
57 85Right-handed alpha
Helix 61
AG7
E
99 102Right-handed 310
Helix 62
AG8
E
106 124Right-handed alpha
Helix 63
AG9
E
125 127Right-handed 310
Helix 64
AH1
E
134 158Right-handed alpha
Helix 65
AH2
E
163 194Right-handed alpha
Helix 66
AH3
E
197 223Right-handed alpha
Helix 67
AH4
E
224 227Right-handed 310
Helix 68
AH5
E
236 270Right-handed alpha
Helix 69
AH6
E
272 277Right-handed alpha
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There are 5 sheets in PDB entry 6RF0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
94 97anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
86 89first strand
Strand 2
B
94 97anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
86 89first strand
Strand 2
C
94 97anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
86 89first strand
Strand 2
D
94 97anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
86 89first strand
Strand 2
E
94 97anti-parallel
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