Analysis of interatomic Contacts of Structural Units in PDB entry:
6RF2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RF2 entry

There are 5 chains in PDB entry 6RF2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	MET 1	GLU 441
B	MET 1	THR 429
b	MET 1	THR 429
A	MET 1	GLU 441
C	ARG 178	PHE 264

There are 73 helices in PDB entry 6RF2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	10	28	Right-handed alpha
Helix 2	AA2	a	72	81	Right-handed alpha
Helix 3	AA3	a	103	108	Right-handed alpha
Helix 4	AA4	a	114	128	Right-handed alpha
Helix 5	AA5	a	144	161	Right-handed alpha
Helix 6	AA6	a	182	198	Right-handed alpha
Helix 7	AA7	a	206	216	Right-handed alpha
Helix 8	AA8	a	223	239	Right-handed alpha
Helix 9	AA9	a	239	244	Right-handed alpha
Helix 10	AB1	a	251	259	Right-handed alpha
Helix 11	AB2	a	289	297	Right-handed alpha
Helix 12	AB3	a	298	301	Right-handed 310
Helix 13	AB4	a	306	310	Right-handed 310
Helix 14	AB5	a	324	336	Right-handed alpha
Helix 15	AB6	a	384	401	Right-handed alpha
Helix 16	AB7	a	405	410	Right-handed alpha
Helix 17	AB8	a	416	437	Right-handed alpha
Helix 18	AB9	B	10	27	Right-handed alpha
Helix 19	AC1	B	46	49	Right-handed 310
Helix 20	AC2	B	55	57	Right-handed 310
Helix 21	AC3	B	73	78	Right-handed alpha
Helix 22	AC4	B	108	113	Right-handed alpha
Helix 23	AC5	B	113	127	Right-handed alpha
Helix 24	AC6	B	142	159	Right-handed alpha
Helix 25	AC7	B	180	196	Right-handed alpha
Helix 26	AC8	B	204	214	Right-handed alpha
Helix 27	AC9	B	221	237	Right-handed alpha
Helix 28	AD1	B	251	256	Right-handed alpha
Helix 29	AD2	B	278	282	Right-handed 310
Helix 30	AD3	B	285	294	Right-handed alpha
Helix 31	AD4	B	322	337	Right-handed alpha
Helix 32	AD5	B	338	341	Right-handed 310
Helix 33	AD6	B	374	390	Right-handed alpha
Helix 34	AD7	B	398	402	Right-handed 310
Helix 35	AD8	B	404	425	Right-handed alpha
Helix 36	AD9	b	10	27	Right-handed alpha
Helix 37	AE1	b	46	49	Right-handed 310
Helix 38	AE2	b	55	57	Right-handed 310
Helix 39	AE3	b	73	78	Right-handed alpha
Helix 40	AE4	b	108	113	Right-handed alpha
Helix 41	AE5	b	113	127	Right-handed alpha
Helix 42	AE6	b	142	159	Right-handed alpha
Helix 43	AE7	b	180	196	Right-handed alpha
Helix 44	AE8	b	204	214	Right-handed alpha
Helix 45	AE9	b	221	237	Right-handed alpha
Helix 46	AF1	b	251	256	Right-handed alpha
Helix 47	AF2	b	278	282	Right-handed 310
Helix 48	AF3	b	285	294	Right-handed alpha
Helix 49	AF4	b	322	337	Right-handed alpha
Helix 50	AF5	b	338	341	Right-handed 310
Helix 51	AF6	b	374	390	Right-handed alpha
Helix 52	AF7	b	398	402	Right-handed 310
Helix 53	AF8	b	404	425	Right-handed alpha
Helix 54	AF9	A	10	28	Right-handed alpha
Helix 55	AG1	A	72	81	Right-handed alpha
Helix 56	AG2	A	103	108	Right-handed alpha
Helix 57	AG3	A	114	128	Right-handed alpha
Helix 58	AG4	A	144	161	Right-handed alpha
Helix 59	AG5	A	182	198	Right-handed alpha
Helix 60	AG6	A	206	216	Right-handed alpha
Helix 61	AG7	A	223	239	Right-handed alpha
Helix 62	AG8	A	239	244	Right-handed alpha
Helix 63	AG9	A	251	259	Right-handed alpha
Helix 64	AH1	A	289	297	Right-handed alpha
Helix 65	AH2	A	298	301	Right-handed 310
Helix 66	AH3	A	306	310	Right-handed 310
Helix 67	AH4	A	324	336	Right-handed alpha
Helix 68	AH5	A	384	401	Right-handed alpha
Helix 69	AH6	A	405	410	Right-handed alpha
Helix 70	AH7	A	416	437	Right-handed alpha
Helix 71	AH8	C	206	214	Right-handed alpha
Helix 72	AH9	C	215	218	Right-handed 310
Helix 73	AI1	C	239	243	Right-handed 310

There are 18 sheets in PDB entry 6RF2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	3	4	first strand
Strand 2	a	132	134	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	92	93	first strand
Strand 2	a	65	68	parallel
Strand 3	a	6	9	parallel
Strand 4	a	137	138	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	53	55	first strand
Strand 2	a	61	63	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	168	172	first strand
Strand 2	a	201	205	parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	269	273	first strand
Strand 2	a	373	381	anti-parallel
Strand 3	a	312	321	anti-parallel
Strand 4	a	351	356	parallel

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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	63	67	parallel
Strand 3	B	3	9	parallel
Strand 4	B	130	136	parallel
Strand 5	B	163	167	parallel
Strand 6	B	198	200	parallel
Strand 7	B	265	271	parallel
Strand 8	B	364	371	anti-parallel
Strand 9	B	310	318	anti-parallel
Strand 10	B	349	353	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	53	first strand
Strand 2	B	59	61	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	202	203	parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	90	92	first strand
Strand 2	b	63	67	parallel
Strand 3	b	3	9	parallel
Strand 4	b	130	136	parallel
Strand 5	b	163	167	parallel
Strand 6	b	198	200	parallel
Strand 7	b	265	271	parallel
Strand 8	b	364	371	anti-parallel
Strand 9	b	310	318	anti-parallel
Strand 10	b	349	353	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	51	53	first strand
Strand 2	b	59	61	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	169	170	first strand
Strand 2	b	202	203	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	132	134	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	92	93	first strand
Strand 2	A	65	68	parallel
Strand 3	A	6	9	parallel
Strand 4	A	137	138	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	61	63	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	172	first strand
Strand 2	A	201	205	parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	269	273	first strand
Strand 2	A	373	381	anti-parallel
Strand 3	A	312	321	anti-parallel
Strand 4	A	351	356	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	181	first strand
Strand 2	C	198	199	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	183	185	first strand
Strand 2	C	248	251	parallel
Strand 3	C	228	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RF2

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RF2