Analysis of interatomic Contacts of Structural Units in PDB entry:
6RFY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RFY entry

There are 4 chains in PDB entry 6RFY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	PHE 411
B	GLU 3	PHE 411
C	GLU 3	PHE 411
D	GLU 3	PRO 70

There are120 helices in PDB entry 6RFY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	26	Right-handed alpha
Helix 2	AA2	A	31	40	Right-handed alpha
Helix 3	AA3	A	41	42	Right-handed 310
Helix 4	AA4	A	43	46	Right-handed 310
Helix 5	AA5	A	87	90	Right-handed 310
Helix 6	AA6	A	93	109	Right-handed alpha
Helix 7	AA7	A	120	124	Right-handed 310
Helix 8	AA8	A	143	145	Right-handed 310
Helix 9	AA9	A	162	178	Right-handed alpha
Helix 10	AB1	A	179	181	Right-handed 310
Helix 11	AB2	A	188	196	Right-handed alpha
Helix 12	AB3	A	199	206	Right-handed alpha
Helix 13	AB4	A	251	264	Right-handed alpha
Helix 14	AB5	A	281	286	Right-handed alpha
Helix 15	AB6	A	288	292	Right-handed 310
Helix 16	AB7	A	306	314	Right-handed alpha
Helix 17	AB8	A	331	335	Right-handed 310
Helix 18	AB9	A	362	369	Right-handed alpha
Helix 19	AC1	A	374	381	Right-handed alpha
Helix 20	AC2	A	390	400	Right-handed alpha
Helix 21	AC3	B	11	26	Right-handed alpha
Helix 22	AC4	B	31	39	Right-handed alpha
Helix 23	AC5	B	40	42	Right-handed 310
Helix 24	AC6	B	43	46	Right-handed 310
Helix 25	AC7	B	87	90	Right-handed 310
Helix 26	AC8	B	93	109	Right-handed alpha
Helix 27	AC9	B	120	124	Right-handed 310
Helix 28	AD1	B	143	145	Right-handed 310
Helix 29	AD2	B	162	178	Right-handed alpha
Helix 30	AD3	B	179	181	Right-handed 310
Helix 31	AD4	B	188	196	Right-handed alpha
Helix 32	AD5	B	199	206	Right-handed alpha
Helix 33	AD6	B	251	264	Right-handed alpha
Helix 34	AD7	B	280	286	Right-handed alpha
Helix 35	AD8	B	288	292	Right-handed 310
Helix 36	AD9	B	306	314	Right-handed alpha
Helix 37	AE1	B	331	335	Right-handed 310
Helix 38	AE2	B	362	369	Right-handed alpha
Helix 39	AE3	B	374	381	Right-handed alpha
Helix 40	AE4	B	390	400	Right-handed alpha
Helix 41	AE5	C	11	26	Right-handed alpha
Helix 42	AE6	C	31	40	Right-handed alpha
Helix 43	AE7	C	41	42	Right-handed 310
Helix 44	AE8	C	43	46	Right-handed 310
Helix 45	AE9	C	87	90	Right-handed 310
Helix 46	AF1	C	93	109	Right-handed alpha
Helix 47	AF2	C	120	124	Right-handed 310
Helix 48	AF3	C	143	145	Right-handed 310
Helix 49	AF4	C	162	178	Right-handed alpha
Helix 50	AF5	C	179	181	Right-handed 310
Helix 51	AF6	C	188	196	Right-handed alpha
Helix 52	AF7	C	199	206	Right-handed alpha
Helix 53	AF8	C	251	264	Right-handed alpha
Helix 54	AF9	C	281	286	Right-handed alpha
Helix 55	AG1	C	288	292	Right-handed 310
Helix 56	AG2	C	306	314	Right-handed alpha
Helix 57	AG3	C	331	335	Right-handed 310
Helix 58	AG4	C	362	369	Right-handed alpha
Helix 59	AG5	C	374	381	Right-handed alpha
Helix 60	AG6	C	390	400	Right-handed alpha
Helix 61	AG7	D	11	26	Right-handed alpha
Helix 62	AG8	D	31	39	Right-handed alpha
Helix 63	AG9	D	40	42	Right-handed 310
Helix 64	AH1	D	43	46	Right-handed 310
Helix 65	AH2	D	87	90	Right-handed 310
Helix 66	AH3	D	93	109	Right-handed alpha
Helix 67	AH4	D	120	124	Right-handed 310
Helix 68	AH5	D	143	145	Right-handed 310
Helix 69	AH6	D	162	178	Right-handed alpha
Helix 70	AH7	D	179	181	Right-handed 310
Helix 71	AH8	D	188	196	Right-handed alpha
Helix 72	AH9	D	199	206	Right-handed alpha
Helix 73	AI1	D	251	264	Right-handed alpha
Helix 74	AI2	D	281	286	Right-handed alpha
Helix 75	AI3	D	288	292	Right-handed 310
Helix 76	AI4	D	306	314	Right-handed alpha
Helix 77	AI5	D	331	335	Right-handed 310
Helix 78	AI6	D	362	369	Right-handed alpha
Helix 79	AI7	D	374	381	Right-handed alpha
Helix 80	AI8	D	390	400	Right-handed alpha
Helix 81	AI9	E	11	26	Right-handed alpha
Helix 82	AJ1	E	31	40	Right-handed alpha
Helix 83	AJ2	E	41	42	Right-handed 310
Helix 84	AJ3	E	43	46	Right-handed 310
Helix 85	AJ4	E	87	90	Right-handed 310
Helix 86	AJ5	E	93	109	Right-handed alpha
Helix 87	AJ6	E	120	124	Right-handed 310
Helix 88	AJ7	E	143	145	Right-handed 310
Helix 89	AJ8	E	162	178	Right-handed alpha
Helix 90	AJ9	E	179	181	Right-handed 310
Helix 91	AK1	E	188	196	Right-handed alpha
Helix 92	AK2	E	199	206	Right-handed alpha
Helix 93	AK3	E	251	264	Right-handed alpha
Helix 94	AK4	E	281	286	Right-handed alpha
Helix 95	AK5	E	288	292	Right-handed 310
Helix 96	AK6	E	306	314	Right-handed alpha
Helix 97	AK7	E	331	335	Right-handed 310
Helix 98	AK8	E	362	369	Right-handed alpha
Helix 99	AK9	E	374	381	Right-handed alpha
Helix 100	AL1	E	390	400	Right-handed alpha
Helix 101	AL2	F	11	26	Right-handed alpha
Helix 102	AL3	F	31	39	Right-handed alpha
Helix 103	AL4	F	40	42	Right-handed 310
Helix 104	AL5	F	43	46	Right-handed 310
Helix 105	AL6	F	87	90	Right-handed 310
Helix 106	AL7	F	93	109	Right-handed alpha
Helix 107	AL8	F	120	124	Right-handed 310
Helix 108	AL9	F	143	145	Right-handed 310
Helix 109	AM1	F	162	178	Right-handed alpha
Helix 110	AM2	F	179	181	Right-handed 310
Helix 111	AM3	F	188	196	Right-handed alpha
Helix 112	AM4	F	199	206	Right-handed alpha
Helix 113	AM5	F	251	264	Right-handed alpha
Helix 114	AM6	F	281	286	Right-handed alpha
Helix 115	AM7	F	288	292	Right-handed 310
Helix 116	AM8	F	306	314	Right-handed alpha
Helix 117	AM9	F	331	335	Right-handed 310
Helix 118	AN1	F	362	369	Right-handed alpha
Helix 119	AN2	F	374	381	Right-handed alpha
Helix 120	AN3	F	390	400	Right-handed alpha

There are 12 sheets in PDB entry 6RFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 12 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	8	first strand
Strand 2	A	48	51	anti-parallel
Strand 3	A	56	68	anti-parallel
Strand 4	A	74	85	anti-parallel
Strand 5	A	113	117	parallel
Strand 6	A	293	304	anti-parallel
Strand 7	B	293	304	anti-parallel
Strand 8	B	113	117	anti-parallel
Strand 9	B	74	85	parallel
Strand 10	B	56	68	anti-parallel
Strand 11	B	48	51	anti-parallel
Strand 12	B	5	8	anti-parallel

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There are 14 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	157	161	first strand
Strand 2	A	210	215	anti-parallel
Strand 3	A	221	230	anti-parallel
Strand 4	A	241	249	anti-parallel
Strand 5	A	270	276	parallel
Strand 6	A	130	141	anti-parallel
Strand 7	A	293	304	anti-parallel
Strand 8	B	293	304	anti-parallel
Strand 9	B	130	141	anti-parallel
Strand 10	B	270	276	anti-parallel
Strand 11	B	241	249	parallel
Strand 12	B	221	230	anti-parallel
Strand 13	B	210	215	anti-parallel
Strand 14	B	157	161	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	347	351	first strand
Strand 2	A	336	342	anti-parallel
Strand 3	A	320	327	anti-parallel
Strand 4	A	358	361	parallel
Strand 5	A	385	386	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	351	first strand
Strand 2	B	336	342	anti-parallel
Strand 3	B	320	327	anti-parallel
Strand 4	B	358	361	parallel
Strand 5	B	385	386	anti-parallel

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There are 12 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	8	first strand
Strand 2	C	48	51	anti-parallel
Strand 3	C	56	68	anti-parallel
Strand 4	C	74	85	anti-parallel
Strand 5	C	113	117	parallel
Strand 6	C	293	304	anti-parallel
Strand 7	D	293	304	anti-parallel
Strand 8	D	113	117	anti-parallel
Strand 9	D	74	85	parallel
Strand 10	D	56	68	anti-parallel
Strand 11	D	48	51	anti-parallel
Strand 12	D	5	8	anti-parallel

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There are 14 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	157	161	first strand
Strand 2	C	210	215	anti-parallel
Strand 3	C	221	230	anti-parallel
Strand 4	C	241	249	anti-parallel
Strand 5	C	270	276	parallel
Strand 6	C	130	141	anti-parallel
Strand 7	C	293	304	anti-parallel
Strand 8	D	293	304	anti-parallel
Strand 9	D	130	141	anti-parallel
Strand 10	D	270	276	anti-parallel
Strand 11	D	241	249	parallel
Strand 12	D	221	230	anti-parallel
Strand 13	D	210	215	anti-parallel
Strand 14	D	157	161	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	347	351	first strand
Strand 2	C	336	342	anti-parallel
Strand 3	C	320	327	anti-parallel
Strand 4	C	358	361	parallel
Strand 5	C	385	386	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	347	351	first strand
Strand 2	D	336	342	anti-parallel
Strand 3	D	320	327	anti-parallel
Strand 4	D	358	361	parallel
Strand 5	D	385	386	anti-parallel

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There are 12 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	8	first strand
Strand 2	E	48	51	anti-parallel
Strand 3	E	56	68	anti-parallel
Strand 4	E	74	85	anti-parallel
Strand 5	E	113	117	parallel
Strand 6	E	293	304	anti-parallel
Strand 7	F	293	304	anti-parallel
Strand 8	F	113	117	anti-parallel
Strand 9	F	74	85	parallel
Strand 10	F	56	68	anti-parallel
Strand 11	F	48	51	anti-parallel
Strand 12	F	5	8	anti-parallel

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There are 14 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	157	161	first strand
Strand 2	E	210	215	anti-parallel
Strand 3	E	221	230	anti-parallel
Strand 4	E	241	249	anti-parallel
Strand 5	E	270	277	parallel
Strand 6	E	130	141	anti-parallel
Strand 7	E	293	304	anti-parallel
Strand 8	F	293	304	anti-parallel
Strand 9	F	130	141	anti-parallel
Strand 10	F	270	276	anti-parallel
Strand 11	F	241	249	parallel
Strand 12	F	221	230	anti-parallel
Strand 13	F	210	215	anti-parallel
Strand 14	F	157	161	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	347	351	first strand
Strand 2	E	336	342	anti-parallel
Strand 3	E	320	327	anti-parallel
Strand 4	E	358	361	parallel
Strand 5	E	385	386	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	347	351	first strand
Strand 2	F	336	342	anti-parallel
Strand 3	F	320	327	anti-parallel
Strand 4	F	358	361	parallel
Strand 5	F	385	386	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RFY

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RFY