Analysis of interatomic Contacts of Structural Units in PDB entry:
6RGL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RGL entry

There are 4 chains in PDB entry 6RGL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	THR 4	ASP 351
A	THR 4	ASP 351
C	VAL 4	ASP 448
D	THR 2	ASP 406

There are 46 helices in PDB entry 6RGL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	51	59	Right-handed alpha
Helix 2	AA2	B	65	77	Right-handed alpha
Helix 3	AA3	B	89	98	Right-handed alpha
Helix 4	AA4	B	109	121	Right-handed alpha
Helix 5	AA5	B	172	189	Right-handed alpha
Helix 6	AA6	B	210	215	Right-handed alpha
Helix 7	AA7	B	249	259	Right-handed alpha
Helix 8	AA8	B	260	267	Right-handed alpha
Helix 9	AA9	B	268	271	Right-handed 310
Helix 10	AB1	B	276	297	Right-handed alpha
Helix 11	AB2	B	320	326	Right-handed alpha
Helix 12	AB3	A	51	59	Right-handed alpha
Helix 13	AB4	A	67	77	Right-handed alpha
Helix 14	AB5	A	89	98	Right-handed alpha
Helix 15	AB6	A	111	122	Right-handed alpha
Helix 16	AB7	A	172	189	Right-handed alpha
Helix 17	AB8	A	249	259	Right-handed alpha
Helix 18	AB9	A	262	267	Right-handed alpha
Helix 19	AC1	A	268	270	Right-handed 310
Helix 20	AC2	A	276	296	Right-handed alpha
Helix 21	AC3	A	320	326	Right-handed alpha
Helix 22	AC4	C	40	44	Right-handed 310
Helix 23	AC5	C	53	60	Right-handed alpha
Helix 24	AC6	C	110	122	Right-handed alpha
Helix 25	AC7	C	136	142	Right-handed alpha
Helix 26	AC8	C	143	148	Right-handed alpha
Helix 27	AC9	C	162	171	Right-handed alpha
Helix 28	AD1	C	173	178	Right-handed 310
Helix 29	AD2	C	277	285	Right-handed alpha
Helix 30	AD3	C	307	315	Right-handed alpha
Helix 31	AD4	C	346	364	Right-handed alpha
Helix 32	AD5	C	373	393	Right-handed alpha
Helix 33	AD6	C	417	421	Right-handed 310
Helix 34	AD7	D	51	56	Right-handed alpha
Helix 35	AD8	D	64	74	Right-handed alpha
Helix 36	AD9	D	91	104	Right-handed alpha
Helix 37	AE1	D	108	113	Right-handed alpha
Helix 38	AE2	D	126	132	Right-handed alpha
Helix 39	AE3	D	149	167	Right-handed alpha
Helix 40	AE4	D	183	188	Right-handed alpha
Helix 41	AE5	D	192	198	Right-handed alpha
Helix 42	AE6	D	222	237	Right-handed alpha
Helix 43	AE7	D	257	261	Right-handed 310
Helix 44	AE8	D	302	320	Right-handed alpha
Helix 45	AE9	D	328	349	Right-handed alpha
Helix 46	AF1	D	372	378	Right-handed alpha

There are 15 sheets in PDB entry 6RGL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	48	first strand
Strand 2	B	83	85	anti-parallel
Strand 3	B	30	33	parallel
Strand 4	B	102	103	parallel
Strand 5	B	127	128	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	309	312	first strand
Strand 2	B	332	335	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	340	341	first strand
Strand 2	D	325	326	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	347	349	first strand
Strand 2	D	384	387	parallel
Strand 3	D	361	363	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	49	first strand
Strand 2	A	82	85	anti-parallel
Strand 3	A	30	33	parallel
Strand 4	A	102	104	parallel
Strand 5	A	127	129	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	225	226	first strand
Strand 2	A	234	235	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	309	312	first strand
Strand 2	A	332	335	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	350	first strand
Strand 2	C	425	432	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	50	first strand
Strand 2	C	126	128	anti-parallel
Strand 3	C	31	32	parallel
Strand 4	C	155	157	parallel
Strand 5	C	184	185	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	187	188	first strand
Strand 2	C	206	207	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	213	first strand
Strand 2	C	266	268	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	321	325	first strand
Strand 2	C	329	333	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	47	48	first strand
Strand 2	D	81	82	anti-parallel
Strand 3	D	27	29	parallel
Strand 4	D	120	122	parallel
Strand 5	D	171	173	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	220	first strand
Strand 2	D	206	211	anti-parallel
Strand 3	D	251	254	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	274	277	first strand
Strand 2	D	283	286	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RGL

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RGL