Analysis of interatomic Contacts of Structural Units in PDB entry:
6RGO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RGO entry

There are 4 chains in PDB entry 6RGO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 392
B
 MET 1ASP 392
C
 SER 70ARG 107
D
 SER 70LEU 104
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 2 helices in PDB entry 6RGO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
71 107Right-handed alpha
Helix 2
AA2
D
71 104Right-handed alpha
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There are 14 sheets in PDB entry 6RGO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 8first strand
Strand 2
A
14 17anti-parallel
Strand 3
A
25 28anti-parallel
Strand 4
A
33 37anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 54first strand
Strand 2
A
60 63anti-parallel
Strand 3
A
76 80anti-parallel
Strand 4
A
85 90anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 101first strand
Strand 2
A
105 110anti-parallel
Strand 3
A
114 119anti-parallel
Strand 4
A
125 130anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 157first strand
Strand 2
A
164 169anti-parallel
Strand 3
A
182 187anti-parallel
Strand 4
A
192 197anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 210first strand
Strand 2
A
216 221anti-parallel
Strand 3
A
227 231anti-parallel
Strand 4
A
242 246anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
255 260first strand
Strand 2
A
266 271anti-parallel
Strand 3
A
275 280anti-parallel
Strand 4
A
339 342anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
349 352first strand
Strand 2
A
360 365anti-parallel
Strand 3
A
369 374anti-parallel
Strand 4
A
384 390anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
7 8first strand
Strand 2
B
14 18anti-parallel
Strand 3
B
24 28anti-parallel
Strand 4
B
34 37anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 54first strand
Strand 2
B
60 63anti-parallel
Strand 3
B
76 80anti-parallel
Strand 4
B
85 90anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
96 101first strand
Strand 2
B
105 110anti-parallel
Strand 3
B
114 119anti-parallel
Strand 4
B
125 130anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 157first strand
Strand 2
B
164 169anti-parallel
Strand 3
B
182 187anti-parallel
Strand 4
B
192 197anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
205 210first strand
Strand 2
B
216 221anti-parallel
Strand 3
B
227 231anti-parallel
Strand 4
B
242 246anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
255 260first strand
Strand 2
B
266 271anti-parallel
Strand 3
B
275 280anti-parallel
Strand 4
B
339 342anti-parallel
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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 352first strand
Strand 2
B
360 365anti-parallel
Strand 3
B
369 374anti-parallel
Strand 4
B
384 390anti-parallel
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