Analysis of interatomic Contacts of Structural Units in PDB entry:
6RGS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RGS entry

There are 3 chains in PDB entry 6RGS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 25THR 201
A
 ASP 205ILE 715
B
 GLU 25ASP 76
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 60 helices in PDB entry 6RGS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 36Right-handed alpha
Helix 2
AA2
A
40 53Right-handed alpha
Helix 3
AA3
A
65 74Right-handed alpha
Helix 4
AA4
A
88 103Right-handed alpha
Helix 5
AA5
A
129 139Right-handed alpha
Helix 6
AA6
A
152 166Right-handed alpha
Helix 7
AA7
A
175 188Right-handed alpha
Helix 8
AA8
A
205 217Right-handed alpha
Helix 9
AA9
A
233 242Right-handed alpha
Helix 10
AB1
A
253 260Right-handed alpha
Helix 11
AB2
A
262 295Right-handed alpha
Helix 12
AB3
A
297 301Right-handed 310
Helix 13
AB4
A
302 308Right-handed alpha
Helix 14
AB5
A
311 327Right-handed alpha
Helix 15
AB6
A
350 355Right-handed alpha
Helix 16
AB7
A
355 379Right-handed alpha
Helix 17
AB8
A
402 431Right-handed alpha
Helix 18
AB9
A
440 444Right-handed 310
Helix 19
AC1
A
448 452Right-handed 310
Helix 20
AC2
A
455 473Right-handed alpha
Helix 21
AC3
A
493 548Right-handed alpha
Helix 22
AC4
A
562 573Right-handed alpha
Helix 23
AC5
A
574 578Right-handed 310
Helix 24
AC6
A
587 603Right-handed alpha
Helix 25
AC7
A
618 643Right-handed alpha
Helix 26
AC8
A
650 655Right-handed 310
Helix 27
AC9
A
657 666Right-handed alpha
Helix 28
AD1
A
680 694Right-handed alpha
Helix 29
AD2
A
697 704Right-handed alpha
Helix 30
AD3
B
29 37Right-handed alpha
Helix 31
AD4
B
40 53Right-handed alpha
Helix 32
AD5
B
65 74Right-handed alpha
Helix 33
AD6
B
88 103Right-handed alpha
Helix 34
AD7
B
129 139Right-handed alpha
Helix 35
AD8
B
152 166Right-handed alpha
Helix 36
AD9
B
175 188Right-handed alpha
Helix 37
AE1
B
205 217Right-handed alpha
Helix 38
AE2
B
233 242Right-handed alpha
Helix 39
AE3
B
253 260Right-handed alpha
Helix 40
AE4
B
262 294Right-handed alpha
Helix 41
AE5
B
297 301Right-handed 310
Helix 42
AE6
B
302 308Right-handed alpha
Helix 43
AE7
B
311 327Right-handed alpha
Helix 44
AE8
B
328 332Right-handed 310
Helix 45
AE9
B
350 355Right-handed alpha
Helix 46
AF1
B
355 378Right-handed alpha
Helix 47
AF2
B
389 392Right-handed 310
Helix 48
AF3
B
402 432Right-handed alpha
Helix 49
AF4
B
440 444Right-handed 310
Helix 50
AF5
B
448 452Right-handed 310
Helix 51
AF6
B
455 473Right-handed alpha
Helix 52
AF7
B
493 548Right-handed alpha
Helix 53
AF8
B
563 573Right-handed alpha
Helix 54
AF9
B
574 578Right-handed 310
Helix 55
AG1
B
588 603Right-handed alpha
Helix 56
AG2
B
618 644Right-handed alpha
Helix 57
AG3
B
650 655Right-handed 310
Helix 58
AG4
B
657 666Right-handed alpha
Helix 59
AG5
B
680 694Right-handed alpha
Helix 60
AG6
B
697 704Right-handed alpha
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There are 6 sheets in PDB entry 6RGS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 59first strand
Strand 2
A
81 84parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
191 192first strand
Strand 2
A
224 225anti-parallel
Strand 3
A
231 232anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
386 388first strand
Strand 2
A
393 395anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 59first strand
Strand 2
B
81 84parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
191 192first strand
Strand 2
B
224 225anti-parallel
Strand 3
B
231 232anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
386 388first strand
Strand 2
B
393 395anti-parallel
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