Analysis of interatomic Contacts of Structural Units in PDB entry:
6RGV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RGV entry

There is 1 chain in PDB entry 6RGV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 54SER 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 6RGV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 100Right-handed alpha
Helix 2
AA2
A
105 130Right-handed alpha
Helix 3
AA3
A
204 213Right-handed alpha
Helix 4
AA4
A
223 225Right-handed 310
Helix 5
AA5
A
244 250Right-handed 310
Helix 6
AA6
A
295 305Right-handed alpha
Helix 7
AA7
A
308 314Right-handed alpha
Helix 8
AA8
A
394 398Right-handed alpha
Helix 9
AA9
A
418 459Right-handed alpha
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There are 7 sheets in PDB entry 6RGV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 147first strand
Strand 2
A
155 160anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 185first strand
Strand 2
A
316 323anti-parallel
Strand 3
A
329 338anti-parallel
Strand 4
A
341 347anti-parallel
Strand 5
A
354 356anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
187 192first strand
Strand 2
A
286 291anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 221first strand
Strand 2
A
234 242anti-parallel
Strand 3
A
251 257anti-parallel
Strand 4
A
263 264anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 221first strand
Strand 2
A
234 242anti-parallel
Strand 3
A
227 229anti-parallel
Strand 4
A
279 280anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
358 362first strand
Strand 2
A
368 372anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
374 376first strand
Strand 2
A
382 387anti-parallel
Strand 3
A
390 393anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il