Analysis of interatomic Contacts of Structural Units in PDB entry:
6RGZ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RGZ entry

There are 6 chains in PDB entry 6RGZ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 243ASP 479
B
 ARG 246LYS 478
C
 SER 2LEU 52
C
 ILE 54GLU 122
D
 MET 1LEU 52
D
 ILE 54GLU 122
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 6RGZ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
245 279Right-handed alpha
Helix 2
AA2
A
284 317Right-handed alpha
Helix 3
AA3
A
329 340Right-handed alpha
Helix 4
AA4
A
340 347Right-handed alpha
Helix 5
AA5
A
366 384Right-handed alpha
Helix 6
AA6
A
417 422Right-handed alpha
Helix 7
AA7
A
433 437Right-handed 310
Helix 8
AA8
A
444 456Right-handed alpha
Helix 9
AA9
B
247 279Right-handed alpha
Helix 10
AB1
B
280 283Right-handed 310
Helix 11
AB2
B
284 317Right-handed alpha
Helix 12
AB3
B
329 347Right-handed alpha
Helix 13
AB4
B
366 384Right-handed alpha
Helix 14
AB5
B
417 422Right-handed alpha
Helix 15
AB6
B
444 456Right-handed alpha
Helix 16
AB7
C
11 24Right-handed alpha
Helix 17
AB8
C
34 42Right-handed alpha
Helix 18
AB9
C
60 71Right-handed alpha
Helix 19
AC1
C
87 97Right-handed alpha
Helix 20
AC2
C
108 121Right-handed alpha
Helix 21
AC3
D
11 25Right-handed alpha
Helix 22
AC4
D
34 42Right-handed alpha
Helix 23
AC5
D
60 71Right-handed alpha
Helix 24
AC6
D
87 97Right-handed alpha
Helix 25
AC7
D
108 121Right-handed alpha
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There are 6 sheets in PDB entry 6RGZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
325 328first strand
Strand 2
A
362 365anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 355first strand
Strand 2
A
393 400parallel
Strand 3
A
404 411anti-parallel
Strand 4
A
469 477anti-parallel
Strand 5
A
459 465anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
325 328first strand
Strand 2
B
362 365anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
350 355first strand
Strand 2
B
393 400parallel
Strand 3
B
404 411anti-parallel
Strand 4
B
469 477anti-parallel
Strand 5
B
459 465anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
28 32first strand
Strand 2
C
4 8parallel
Strand 3
C
49 52parallel
Strand 4
C
79 83parallel
Strand 5
C
101 104parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
28 32first strand
Strand 2
D
4 8parallel
Strand 3
D
49 52parallel
Strand 4
D
79 83parallel
Strand 5
D
101 104parallel
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