Analysis of interatomic Contacts of Structural Units in PDB entry:
6RID

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RID entry

There are 11 chains in PDB entry 6RID (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	MET 1264
B	GLU 8	PHE 1162
C	HIS 3	LEU 305
E	MET 1	ALA 184
F	ILE 62	TYR 164
G	SER 2	ALA 77
J	VAL 2	ILE 62
S	ASP 23	LEU 151
N	G 23	T 29
T	A 17	A 34
P	U 22	G 30

There are129 helices in PDB entry 6RID. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	18	Right-handed alpha
Helix 2	AA2	A	78	87	Right-handed alpha
Helix 3	AA3	A	112	116	Right-handed 310
Helix 4	AA4	A	119	124	Right-handed alpha
Helix 5	AA5	A	161	171	Right-handed alpha
Helix 6	AA6	A	173	177	Right-handed 310
Helix 7	AA7	A	185	188	Right-handed 310
Helix 8	AA8	A	199	203	Right-handed 310
Helix 9	AA9	A	219	229	Right-handed alpha
Helix 10	AB1	A	236	249	Right-handed alpha
Helix 11	AB2	A	250	253	Right-handed 310
Helix 12	AB3	A	261	267	Right-handed 310
Helix 13	AB4	A	271	277	Right-handed alpha
Helix 14	AB5	A	304	311	Right-handed alpha
Helix 15	AB6	A	321	331	Right-handed alpha
Helix 16	AB7	A	405	412	Right-handed 310
Helix 17	AB8	A	428	438	Right-handed alpha
Helix 18	AB9	A	458	471	Right-handed alpha
Helix 19	AC1	A	475	484	Right-handed alpha
Helix 20	AC2	A	485	487	Right-handed 310
Helix 21	AC3	A	499	509	Right-handed alpha
Helix 22	AC4	A	529	534	Right-handed alpha
Helix 23	AC5	A	540	549	Right-handed alpha
Helix 24	AC6	A	550	573	Right-handed alpha
Helix 25	AC7	A	577	582	Right-handed alpha
Helix 26	AC8	A	585	615	Right-handed alpha
Helix 27	AC9	A	622	656	Right-handed alpha
Helix 28	AD1	A	659	667	Right-handed alpha
Helix 29	AD2	A	672	681	Right-handed alpha
Helix 30	AD3	A	696	700	Right-handed 310
Helix 31	AD4	A	727	764	Right-handed alpha
Helix 32	AD5	A	784	788	Right-handed 310
Helix 33	AD6	A	809	821	Right-handed alpha
Helix 34	AD7	A	842	846	Right-handed 310
Helix 35	AD8	A	856	875	Right-handed alpha
Helix 36	AD9	A	882	893	Right-handed alpha
Helix 37	AE1	A	901	919	Right-handed alpha
Helix 38	AE2	A	925	944	Right-handed alpha
Helix 39	AE3	A	960	970	Right-handed alpha
Helix 40	AE4	A	984	996	Right-handed alpha
Helix 41	AE5	A	1001	1004	Right-handed 310
Helix 42	AE6	A	1024	1030	Right-handed alpha
Helix 43	AE7	A	1033	1048	Right-handed alpha
Helix 44	AE8	A	1077	1093	Right-handed alpha
Helix 45	AE9	A	1131	1136	Right-handed 310
Helix 46	AF1	A	1146	1154	Right-handed alpha
Helix 47	AF2	A	1155	1170	Right-handed alpha
Helix 48	AF3	A	1175	1177	Right-handed 310
Helix 49	AF4	A	1178	1190	Right-handed alpha
Helix 50	AF5	A	1207	1215	Right-handed alpha
Helix 51	AF6	A	1218	1226	Right-handed alpha
Helix 52	AF7	A	1234	1241	Right-handed alpha
Helix 53	AF8	A	1247	1252	Right-handed 310
Helix 54	AF9	A	1258	1264	Right-handed alpha
Helix 55	AG1	B	9	19	Right-handed alpha
Helix 56	AG2	B	28	30	Right-handed 310
Helix 57	AG3	B	31	44	Right-handed alpha
Helix 58	AG4	B	44	51	Right-handed alpha
Helix 59	AG5	B	81	89	Right-handed alpha
Helix 60	AG6	B	233	242	Right-handed alpha
Helix 61	AG7	B	244	253	Right-handed alpha
Helix 62	AG8	B	257	277	Right-handed alpha
Helix 63	AG9	B	282	298	Right-handed alpha
Helix 64	AH1	B	303	314	Right-handed alpha
Helix 65	AH2	B	316	320	Right-handed 310
Helix 66	AH3	B	323	344	Right-handed alpha
Helix 67	AH4	B	353	357	Right-handed 310
Helix 68	AH5	B	361	392	Right-handed alpha
Helix 69	AH6	B	398	403	Right-handed alpha
Helix 70	AH7	B	407	414	Right-handed alpha
Helix 71	AH8	B	415	417	Right-handed 310
Helix 72	AH9	B	435	440	Right-handed alpha
Helix 73	AI1	B	463	467	Right-handed 310
Helix 74	AI2	B	498	516	Right-handed alpha
Helix 75	AI3	B	544	558	Right-handed alpha
Helix 76	AI4	B	601	604	Right-handed 310
Helix 77	AI5	B	606	611	Right-handed alpha
Helix 78	AI6	B	615	623	Right-handed alpha
Helix 79	AI7	B	632	637	Right-handed alpha
Helix 80	AI8	B	643	649	Right-handed alpha
Helix 81	AI9	B	664	669	Right-handed 310
Helix 82	AJ1	B	672	676	Right-handed 310
Helix 83	AJ2	B	678	682	Right-handed 310
Helix 84	AJ3	B	683	695	Right-handed alpha
Helix 85	AJ4	B	725	731	Right-handed alpha
Helix 86	AJ5	B	762	767	Right-handed alpha
Helix 87	AJ6	B	784	788	Right-handed alpha
Helix 88	AJ7	B	898	902	Right-handed 310
Helix 89	AJ8	B	917	923	Right-handed alpha
Helix 90	AJ9	B	925	941	Right-handed alpha
Helix 91	AK1	B	961	977	Right-handed alpha
Helix 92	AK2	B	981	990	Right-handed alpha
Helix 93	AK3	B	1054	1064	Right-handed alpha
Helix 94	AK4	B	1066	1075	Right-handed alpha
Helix 95	AK5	B	1103	1109	Right-handed alpha
Helix 96	AK6	B	1121	1135	Right-handed alpha
Helix 97	AK7	C	15	30	Right-handed alpha
Helix 98	AK8	C	48	57	Right-handed alpha
Helix 99	AK9	C	58	59	Right-handed 310
Helix 100	AL1	C	60	64	Right-handed 310
Helix 101	AL2	C	65	67	Right-handed 310
Helix 102	AL3	C	68	74	Right-handed alpha
Helix 103	AL4	C	117	122	Right-handed 310
Helix 104	AL5	C	151	156	Right-handed alpha
Helix 105	AL6	C	162	174	Right-handed alpha
Helix 106	AL7	C	191	193	Right-handed 310
Helix 107	AL8	C	207	229	Right-handed alpha
Helix 108	AL9	C	255	265	Right-handed alpha
Helix 109	AM1	C	283	304	Right-handed alpha
Helix 110	AM2	E	4	22	Right-handed alpha
Helix 111	AM3	E	28	33	Right-handed 310
Helix 112	AM4	E	117	128	Right-handed alpha
Helix 113	AM5	E	146	152	Right-handed alpha
Helix 114	AM6	F	63	74	Right-handed alpha
Helix 115	AM7	F	78	95	Right-handed alpha
Helix 116	AM8	F	106	110	Right-handed 310
Helix 117	AM9	F	112	123	Right-handed alpha
Helix 118	AN1	F	143	161	Right-handed alpha
Helix 119	AN2	G	15	19	Right-handed 310
Helix 120	AN3	G	22	35	Right-handed alpha
Helix 121	AN4	J	14	23	Right-handed alpha
Helix 122	AN5	J	27	32	Right-handed alpha
Helix 123	AN6	J	33	35	Right-handed 310
Helix 124	AN7	J	37	47	Right-handed alpha
Helix 125	AN8	S	24	32	Right-handed alpha
Helix 126	AN9	S	37	51	Right-handed alpha
Helix 127	AO1	S	69	80	Right-handed alpha
Helix 128	AO2	S	102	107	Right-handed alpha
Helix 129	AO3	S	112	131	Right-handed alpha

There are 38 sheets in PDB entry 6RID. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1229	1231	first strand
Strand 2	A	4	11	anti-parallel
Strand 3	B	1136	1142	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	23	24	first strand
Strand 2	A	64	67	parallel
Strand 3	A	194	197	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	73	74	first strand
Strand 2	A	190	191	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	144	first strand
Strand 2	A	151	153	anti-parallel
Strand 3	A	158	160	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	280	282	first strand
Strand 2	B	1051	1053	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1027	1029	first strand
Strand 2	A	285	292	anti-parallel
Strand 3	A	420	424	anti-parallel
Strand 4	A	375	379	anti-parallel
Strand 5	A	389	396	anti-parallel
Strand 6	A	300	303	parallel
Strand 7	A	402	404	anti-parallel
Strand 8	A	285	292	parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	312	316	first strand
Strand 2	A	365	369	anti-parallel
Strand 3	A	334	339	anti-parallel
Strand 4	A	344	347	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	519	first strand
Strand 2	A	522	523	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	684	685	first strand
Strand 2	A	717	718	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	766	768	first strand
Strand 2	A	774	776	anti-parallel
Strand 3	A	779	782	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	796	799	first strand
Strand 2	A	835	838	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	825	826	first strand
Strand 2	A	831	832	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1106	1111	first strand
Strand 2	A	1117	1127	anti-parallel
Strand 3	A	976	982	anti-parallel
Strand 4	A	1141	1144	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	998	999	first strand
Strand 2	A	1094	1095	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1006	1012	first strand
Strand 2	A	1015	1023	anti-parallel
Strand 3	A	1065	1074	anti-parallel
Strand 4	A	1051	1060	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	137	first strand
Strand 2	F	128	132	anti-parallel
Strand 3	A	1253	1256	anti-parallel
Strand 4	G	59	61	anti-parallel
Strand 5	G	66	76	anti-parallel
Strand 6	G	4	14	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	135	137	first strand
Strand 2	F	128	132	anti-parallel
Strand 3	A	1253	1256	anti-parallel
Strand 4	G	59	61	anti-parallel
Strand 5	G	66	76	anti-parallel
Strand 6	G	43	50	anti-parallel
Strand 7	G	38	40	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	59	first strand
Strand 2	B	64	76	anti-parallel
Strand 3	B	93	107	anti-parallel
Strand 4	B	112	121	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	59	first strand
Strand 2	B	64	76	anti-parallel
Strand 3	B	93	107	anti-parallel
Strand 4	B	128	131	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	157	158	first strand
Strand 2	B	164	167	anti-parallel
Strand 3	B	426	428	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	359	360	first strand
Strand 2	B	169	171	anti-parallel
Strand 3	B	443	445	parallel
Strand 4	B	485	487	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	179	182	first strand
Strand 2	B	187	195	anti-parallel
Strand 3	B	205	213	anti-parallel
Strand 4	B	221	222	anti-parallel
Strand 5	B	231	232	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	587	595	anti-parallel
Strand 3	B	627	631	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	598	599	first strand
Strand 2	B	587	595	anti-parallel
Strand 3	B	660	661	anti-parallel
Strand 4	B	640	641	parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	535	540	first strand
Strand 2	B	528	532	anti-parallel
Strand 3	B	577	581	parallel
Strand 4	B	567	571	anti-parallel

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There are 5 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	715	first strand
Strand 2	B	772	783	anti-parallel
Strand 3	B	864	875	anti-parallel
Strand 4	B	852	860	anti-parallel
Strand 5	B	812	813	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	715	first strand
Strand 2	B	772	783	anti-parallel
Strand 3	B	864	875	anti-parallel
Strand 4	B	852	860	anti-parallel
Strand 5	J	60	61	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	723	724	first strand
Strand 2	B	952	953	parallel

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There are 8 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	992	993	first strand
Strand 2	B	1008	1017	anti-parallel
Strand 3	B	882	885	anti-parallel
Strand 4	B	891	897	anti-parallel
Strand 5	B	758	761	parallel
Strand 6	B	913	915	anti-parallel
Strand 7	B	740	746	parallel
Strand 8	B	1008	1017	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1084	1087	first strand
Strand 2	B	1115	1118	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1095	1096	first strand
Strand 2	B	1101	1102	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	13	first strand
Strand 2	C	195	203	anti-parallel
Strand 3	C	188	190	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	32	33	first strand
Strand 2	C	183	184	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	37	43	first strand
Strand 2	C	138	144	anti-parallel
Strand 3	C	77	86	anti-parallel
Strand 4	C	99	105	anti-parallel
Strand 5	C	110	113	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	94	first strand
Strand 2	C	126	127	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	233	234	first strand
Strand 2	C	243	245	parallel
Strand 3	C	250	253	anti-parallel
Strand 4	C	273	276	anti-parallel

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There are 5 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	35	40	first strand
Strand 2	E	46	52	anti-parallel
Strand 3	E	58	65	anti-parallel
Strand 4	E	82	85	parallel
Strand 5	E	94	96	parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	113	115	first strand
Strand 2	E	161	168	anti-parallel
Strand 3	E	172	181	anti-parallel
Strand 4	E	141	143	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RID

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RID