Analysis of interatomic Contacts of Structural Units in PDB entry:
6RJ1

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RJ1 entry

There are 2 chains in PDB entry 6RJ1 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 23	ARG 998
B	SER 23	PRO 661

There are 43 helices in PDB entry 6RJ1. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	56	Right-handed alpha
Helix 2	AA2	A	107	116	Right-handed alpha
Helix 3	AA3	A	178	186	Right-handed alpha
Helix 4	AA4	A	197	202	Right-handed alpha
Helix 5	AA5	A	208	215	Right-handed alpha
Helix 6	AA6	A	218	220	Right-handed 310
Helix 7	AA7	A	221	226	Right-handed alpha
Helix 8	AA8	A	227	230	Right-handed 310
Helix 9	AA9	A	274	281	Right-handed alpha
Helix 10	AB1	A	281	290	Right-handed alpha
Helix 11	AB2	A	381	388	Right-handed alpha
Helix 12	AB3	A	467	477	Right-handed alpha
Helix 13	AB4	A	524	534	Right-handed alpha
Helix 14	AB5	A	612	618	Right-handed alpha
Helix 15	AB6	A	663	667	Right-handed 310
Helix 16	AB7	A	687	696	Right-handed alpha
Helix 17	AB8	A	722	735	Right-handed alpha
Helix 18	AB9	A	758	762	Right-handed 310
Helix 19	AC1	A	869	871	Right-handed 310
Helix 20	AC2	A	892	894	Right-handed 310
Helix 21	AC3	A	988	997	Right-handed alpha
Helix 22	AC4	B	52	56	Right-handed alpha
Helix 23	AC5	B	107	116	Right-handed alpha
Helix 24	AC6	B	178	186	Right-handed alpha
Helix 25	AC7	B	197	202	Right-handed alpha
Helix 26	AC8	B	208	215	Right-handed alpha
Helix 27	AC9	B	218	220	Right-handed 310
Helix 28	AD1	B	221	226	Right-handed alpha
Helix 29	AD2	B	227	230	Right-handed 310
Helix 30	AD3	B	274	281	Right-handed alpha
Helix 31	AD4	B	281	290	Right-handed alpha
Helix 32	AD5	B	381	388	Right-handed alpha
Helix 33	AD6	B	467	477	Right-handed alpha
Helix 34	AD7	B	524	534	Right-handed alpha
Helix 35	AD8	B	612	618	Right-handed alpha
Helix 36	AD9	B	663	667	Right-handed 310
Helix 37	AE1	B	687	696	Right-handed alpha
Helix 38	AE2	B	722	735	Right-handed alpha
Helix 39	AE3	B	758	762	Right-handed 310
Helix 40	AE4	B	781	785	Right-handed 310
Helix 41	AE5	B	869	871	Right-handed 310
Helix 42	AE6	B	892	894	Right-handed 310
Helix 43	AE7	B	988	997	Right-handed alpha

There are 26 sheets in PDB entry 6RJ1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	32	first strand
Strand 2	A	35	39	anti-parallel
Strand 3	A	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	62	70	first strand
Strand 2	A	74	81	anti-parallel
Strand 3	A	136	143	anti-parallel
Strand 4	A	147	157	anti-parallel
Strand 5	A	509	511	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	104	106	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	242	244	first strand
Strand 2	A	597	599	anti-parallel
Strand 3	A	581	585	anti-parallel
Strand 4	A	672	676	anti-parallel
Strand 5	A	187	189	parallel
Strand 6	A	251	252	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	261	263	first strand
Strand 2	A	378	380	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	483	first strand
Strand 2	A	486	490	anti-parallel
Strand 3	A	499	504	anti-parallel
Strand 4	A	513	514	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	518	520	first strand
Strand 2	A	745	747	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	560	568	first strand
Strand 2	A	571	578	anti-parallel
Strand 3	A	715	721	anti-parallel
Strand 4	A	750	754	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	633	first strand
Strand 2	A	636	638	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	801	808	first strand
Strand 2	A	821	827	anti-parallel
Strand 3	A	830	837	anti-parallel
Strand 4	A	842	843	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	801	808	first strand
Strand 2	A	821	827	anti-parallel
Strand 3	A	830	837	anti-parallel
Strand 4	A	856	860	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	873	879	first strand
Strand 2	A	884	890	anti-parallel
Strand 3	A	910	918	anti-parallel
Strand 4	A	936	946	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	950	955	first strand
Strand 2	A	961	967	anti-parallel
Strand 3	A	974	981	anti-parallel
Strand 4	A	984	987	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	32	first strand
Strand 2	B	35	39	anti-parallel
Strand 3	B	50	51	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	62	70	first strand
Strand 2	B	74	81	anti-parallel
Strand 3	B	136	143	anti-parallel
Strand 4	B	147	157	anti-parallel
Strand 5	B	509	511	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	104	106	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	242	244	first strand
Strand 2	B	597	599	anti-parallel
Strand 3	B	581	585	anti-parallel
Strand 4	B	672	676	anti-parallel
Strand 5	B	187	189	parallel
Strand 6	B	251	252	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	261	263	first strand
Strand 2	B	378	380	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	483	first strand
Strand 2	B	486	490	anti-parallel
Strand 3	B	499	504	anti-parallel
Strand 4	B	513	514	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	518	520	first strand
Strand 2	B	745	747	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	560	568	first strand
Strand 2	B	571	578	anti-parallel
Strand 3	B	715	721	anti-parallel
Strand 4	B	750	754	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	631	633	first strand
Strand 2	B	636	638	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	801	808	first strand
Strand 2	B	821	827	anti-parallel
Strand 3	B	830	837	anti-parallel
Strand 4	B	842	843	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	801	808	first strand
Strand 2	B	821	827	anti-parallel
Strand 3	B	830	837	anti-parallel
Strand 4	B	856	860	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	873	879	first strand
Strand 2	B	884	890	anti-parallel
Strand 3	B	910	918	anti-parallel
Strand 4	B	936	946	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	950	955	first strand
Strand 2	B	961	967	anti-parallel
Strand 3	B	974	981	anti-parallel
Strand 4	B	984	987	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RJ1

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RJ1