Analysis of interatomic Contacts of Structural Units in PDB entry:
6RJ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RJ4 entry

There are 6 chains in PDB entry 6RJ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 2	SER 270
A	ARG 33	ALA 276
D	SER 4	SER 270
C	ARG 33	ALA 276
F	SER 4	SER 270
E	GLN 18	ARG 53

There are 77 helices in PDB entry 6RJ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	4	15	Right-handed alpha
Helix 2	AA2	B	19	28	Right-handed alpha
Helix 3	AA3	B	48	51	Right-handed 310
Helix 4	AA4	B	52	67	Right-handed alpha
Helix 5	AA5	B	79	92	Right-handed alpha
Helix 6	AA6	B	95	119	Right-handed alpha
Helix 7	AA7	B	120	122	Right-handed 310
Helix 8	AA8	B	133	142	Right-handed alpha
Helix 9	AA9	B	152	156	Right-handed 310
Helix 10	AB1	B	168	181	Right-handed alpha
Helix 11	AB2	B	213	219	Right-handed alpha
Helix 12	AB3	B	227	237	Right-handed alpha
Helix 13	AB4	B	252	259	Right-handed alpha
Helix 14	AB5	A	47	52	Right-handed alpha
Helix 15	AB6	A	54	69	Right-handed alpha
Helix 16	AB7	A	81	94	Right-handed alpha
Helix 17	AB8	A	97	120	Right-handed alpha
Helix 18	AB9	A	121	124	Right-handed 310
Helix 19	AC1	A	129	144	Right-handed alpha
Helix 20	AC2	A	155	159	Right-handed 310
Helix 21	AC3	A	169	182	Right-handed alpha
Helix 22	AC4	A	204	208	Right-handed 310
Helix 23	AC5	A	216	222	Right-handed alpha
Helix 24	AC6	A	229	238	Right-handed alpha
Helix 25	AC7	A	254	261	Right-handed alpha
Helix 26	AC8	D	5	15	Right-handed alpha
Helix 27	AC9	D	19	28	Right-handed alpha
Helix 28	AD1	D	48	51	Right-handed 310
Helix 29	AD2	D	52	67	Right-handed alpha
Helix 30	AD3	D	79	92	Right-handed alpha
Helix 31	AD4	D	95	119	Right-handed alpha
Helix 32	AD5	D	120	122	Right-handed 310
Helix 33	AD6	D	133	142	Right-handed alpha
Helix 34	AD7	D	152	156	Right-handed 310
Helix 35	AD8	D	168	180	Right-handed alpha
Helix 36	AD9	D	213	219	Right-handed alpha
Helix 37	AE1	D	227	237	Right-handed alpha
Helix 38	AE2	D	252	259	Right-handed alpha
Helix 39	AE3	C	47	52	Right-handed alpha
Helix 40	AE4	C	54	69	Right-handed alpha
Helix 41	AE5	C	81	94	Right-handed alpha
Helix 42	AE6	C	97	120	Right-handed alpha
Helix 43	AE7	C	121	124	Right-handed 310
Helix 44	AE8	C	129	144	Right-handed alpha
Helix 45	AE9	C	155	159	Right-handed 310
Helix 46	AF1	C	169	182	Right-handed alpha
Helix 47	AF2	C	204	208	Right-handed 310
Helix 48	AF3	C	216	222	Right-handed alpha
Helix 49	AF4	C	229	238	Right-handed alpha
Helix 50	AF5	C	254	261	Right-handed alpha
Helix 51	AF6	F	5	15	Right-handed alpha
Helix 52	AF7	F	19	28	Right-handed alpha
Helix 53	AF8	F	48	51	Right-handed 310
Helix 54	AF9	F	52	67	Right-handed alpha
Helix 55	AG1	F	79	92	Right-handed alpha
Helix 56	AG2	F	95	119	Right-handed alpha
Helix 57	AG3	F	120	122	Right-handed 310
Helix 58	AG4	F	133	142	Right-handed alpha
Helix 59	AG5	F	152	156	Right-handed 310
Helix 60	AG6	F	168	181	Right-handed alpha
Helix 61	AG7	F	213	219	Right-handed alpha
Helix 62	AG8	F	227	237	Right-handed alpha
Helix 63	AG9	F	252	259	Right-handed alpha
Helix 64	AH1	E	19	24	Right-handed alpha
Helix 65	AH2	E	47	52	Right-handed alpha
Helix 66	AH3	E	54	69	Right-handed alpha
Helix 67	AH4	E	81	94	Right-handed alpha
Helix 68	AH5	E	97	120	Right-handed alpha
Helix 69	AH6	E	121	124	Right-handed 310
Helix 70	AH7	E	129	136	Right-handed alpha
Helix 71	AH8	E	136	144	Right-handed alpha
Helix 72	AH9	E	155	159	Right-handed 310
Helix 73	AI1	E	169	182	Right-handed alpha
Helix 74	AI2	E	204	208	Right-handed 310
Helix 75	AI3	E	216	222	Right-handed alpha
Helix 76	AI4	E	229	238	Right-handed alpha
Helix 77	AI5	E	254	261	Right-handed alpha

There are 11 sheets in PDB entry 6RJ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	143	147	first strand
Strand 2	B	71	76	parallel
Strand 3	B	38	43	parallel
Strand 4	B	184	189	parallel
Strand 5	B	242	247	parallel
Strand 6	B	265	268	anti-parallel
Strand 7	B	210	212	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	194	195	first strand
Strand 2	B	207	208	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	146	150	first strand
Strand 2	A	73	78	parallel
Strand 3	A	41	46	parallel
Strand 4	A	185	190	parallel
Strand 5	A	244	249	parallel
Strand 6	A	267	270	anti-parallel
Strand 7	A	213	215	parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	125	126	first strand
Strand 2	D	143	147	parallel
Strand 3	D	71	76	parallel
Strand 4	D	38	43	parallel
Strand 5	D	184	189	parallel
Strand 6	D	242	247	parallel
Strand 7	D	265	268	anti-parallel
Strand 8	D	210	212	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	194	195	first strand
Strand 2	D	207	208	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	146	150	first strand
Strand 2	C	73	78	parallel
Strand 3	C	41	46	parallel
Strand 4	C	185	190	parallel
Strand 5	C	244	249	parallel
Strand 6	C	267	270	anti-parallel
Strand 7	C	213	215	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	195	196	first strand
Strand 2	C	210	211	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	125	126	first strand
Strand 2	F	143	147	parallel
Strand 3	F	71	76	parallel
Strand 4	F	38	43	parallel
Strand 5	F	184	189	parallel
Strand 6	F	242	247	parallel
Strand 7	F	265	268	anti-parallel
Strand 8	F	210	212	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	194	195	first strand
Strand 2	F	207	208	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	146	150	first strand
Strand 2	E	74	78	parallel
Strand 3	E	42	46	parallel
Strand 4	E	185	190	parallel
Strand 5	E	244	249	parallel
Strand 6	E	267	270	anti-parallel
Strand 7	E	213	215	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	195	196	first strand
Strand 2	E	210	211	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RJ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RJ4