Analysis of interatomic Contacts of Structural Units in PDB entry:
6RJ9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RJ9 entry

There are 5 chains in PDB entry 6RJ9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ARG 183
B
 MET 1ARG 183
C
 ASP 3PHE 1121
D
 U 2 U 115
E
 A 1 A 19
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 48 helices in PDB entry 6RJ9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 19Right-handed alpha
Helix 2
AA2
A
22 27Right-handed alpha
Helix 3
AA3
A
34 42Right-handed alpha
Helix 4
AA4
A
52 64Right-handed alpha
Helix 5
AA5
A
70 80Right-handed alpha
Helix 6
AA6
A
82 87Right-handed alpha
Helix 7
AA7
A
90 110Right-handed alpha
Helix 8
AA8
A
140 142Right-handed 310
Helix 9
AA9
A
167 178Right-handed alpha
Helix 10
AB1
B
4 19Right-handed alpha
Helix 11
AB2
B
21 25Right-handed 310
Helix 12
AB3
B
34 43Right-handed alpha
Helix 13
AB4
B
52 64Right-handed alpha
Helix 14
AB5
B
67 82Right-handed alpha
Helix 15
AB6
B
82 89Right-handed alpha
Helix 16
AB7
B
90 110Right-handed alpha
Helix 17
AB8
B
167 178Right-handed alpha
Helix 18
AB9
C
40 73Right-handed alpha
Helix 19
AC1
C
87 95Right-handed alpha
Helix 20
AC2
C
103 115Right-handed alpha
Helix 21
AC3
C
135 142Right-handed alpha
Helix 22
AC4
C
143 148Right-handed 310
Helix 23
AC5
C
150 163Right-handed alpha
Helix 24
AC6
C
185 204Right-handed alpha
Helix 25
AC7
C
208 220Right-handed alpha
Helix 26
AC8
C
272 284Right-handed alpha
Helix 27
AC9
C
297 310Right-handed alpha
Helix 28
AD1
C
316 327Right-handed alpha
Helix 29
AD2
C
350 357Right-handed alpha
Helix 30
AD3
C
370 382Right-handed alpha
Helix 31
AD4
C
384 392Right-handed alpha
Helix 32
AD5
C
402 416Right-handed alpha
Helix 33
AD6
C
416 421Right-handed alpha
Helix 34
AD7
C
428 433Right-handed alpha
Helix 35
AD8
C
437 442Right-handed alpha
Helix 36
AD9
C
445 454Right-handed alpha
Helix 37
AE1
C
473 477Right-handed 310
Helix 38
AE2
C
479 500Right-handed alpha
Helix 39
AE3
C
691 704Right-handed alpha
Helix 40
AE4
C
715 727Right-handed alpha
Helix 41
AE5
C
737 749Right-handed alpha
Helix 42
AE6
C
854 868Right-handed alpha
Helix 43
AE7
C
869 871Right-handed 310
Helix 44
AE8
C
872 878Right-handed alpha
Helix 45
AE9
C
881 886Right-handed alpha
Helix 46
AF1
C
910 918Right-handed alpha
Helix 47
AF2
C
986 988Right-handed 310
Helix 48
AF3
C
1000 1011Right-handed alpha
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There are 10 sheets in PDB entry 6RJ9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 122first strand
Strand 2
A
128 138anti-parallel
Strand 3
A
151 154anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 118first strand
Strand 2
B
134 138anti-parallel
Strand 3
B
151 154anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
121 122first strand
Strand 2
B
128 129anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
710 713first strand
Strand 2
C
505 508parallel
Strand 3
C
5 10parallel
Strand 4
C
14 20anti-parallel
Strand 5
C
29 34anti-parallel
Strand 6
C
809 812parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 172first strand
Strand 2
C
177 181anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
934 941first strand
Strand 2
C
842 850anti-parallel
Strand 3
C
828 833anti-parallel
Strand 4
C
957 959anti-parallel
Strand 5
C
946 947anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
977 980first strand
Strand 2
C
964 972anti-parallel
Strand 3
C
983 984anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
977 980first strand
Strand 2
C
964 972anti-parallel
Strand 3
C
1018 1023anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
989 990first strand
Strand 2
C
997 998anti-parallel
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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1085 1088first strand
Strand 2
C
1055 1059anti-parallel
Strand 3
C
1039 1046anti-parallel
Strand 4
C
1028 1033anti-parallel
Strand 5
C
1094 1101anti-parallel
Strand 6
C
1107 1110anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il