Analysis of interatomic Contacts of Structural Units in PDB entry:
6RJD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RJD entry

There are 4 chains in PDB entry 6RJD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASP 3PHE 1121
D
 U 2 U 115
E
 T 11 A 42
G
 G 1 A 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 6RJD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
40 73Right-handed alpha
Helix 2
AA2
C
87 98Right-handed alpha
Helix 3
AA3
C
101 115Right-handed alpha
Helix 4
AA4
C
134 146Right-handed alpha
Helix 5
AA5
C
150 163Right-handed alpha
Helix 6
AA6
C
185 204Right-handed alpha
Helix 7
AA7
C
208 220Right-handed alpha
Helix 8
AA8
C
250 254Right-handed 310
Helix 9
AA9
C
273 287Right-handed alpha
Helix 10
AB1
C
297 311Right-handed alpha
Helix 11
AB2
C
315 328Right-handed alpha
Helix 12
AB3
C
350 358Right-handed alpha
Helix 13
AB4
C
369 382Right-handed alpha
Helix 14
AB5
C
384 396Right-handed alpha
Helix 15
AB6
C
402 416Right-handed alpha
Helix 16
AB7
C
418 422Right-handed 310
Helix 17
AB8
C
428 436Right-handed alpha
Helix 18
AB9
C
437 439Right-handed 310
Helix 19
AC1
C
445 453Right-handed alpha
Helix 20
AC2
C
470 475Right-handed alpha
Helix 21
AC3
C
479 501Right-handed alpha
Helix 22
AC4
C
691 705Right-handed alpha
Helix 23
AC5
C
737 748Right-handed alpha
Helix 24
AC6
C
854 868Right-handed alpha
Helix 25
AC7
C
869 872Right-handed 310
Helix 26
AC8
C
879 892Right-handed alpha
Helix 27
AC9
C
910 918Right-handed alpha
Helix 28
AD1
C
1000 1012Right-handed alpha
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There are 6 sheets in PDB entry 6RJD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
27 34first strand
Strand 2
C
14 21anti-parallel
Strand 3
C
4 10anti-parallel
Strand 4
C
505 509parallel
Strand 5
C
710 712parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
169 172first strand
Strand 2
C
177 180anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
935 941first strand
Strand 2
C
843 849anti-parallel
Strand 3
C
828 832anti-parallel
Strand 4
C
957 959anti-parallel
Strand 5
C
946 947anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
977 984first strand
Strand 2
C
964 972anti-parallel
Strand 3
C
1018 1023anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
989 990first strand
Strand 2
C
997 998anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1057 1059first strand
Strand 2
C
1039 1046anti-parallel
Strand 3
C
1028 1033anti-parallel
Strand 4
C
1094 1101anti-parallel
Strand 5
C
1107 1110anti-parallel
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