Analysis of interatomic Contacts of Structural Units in PDB entry:
6RJF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RJF entry

There are 4 chains in PDB entry 6RJF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
1
 GLY 1THR 281
2
 CYS 7GLN 261
3
 GLY 1GLN 239
4
 GLY 2ASN 69
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 20 helices in PDB entry 6RJF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
1
33 37Right-handed 310
Helix 2
AA2
1
43 47Right-handed 310
Helix 3
AA3
1
63 69Right-handed alpha
Helix 4
AA4
1
100 108Right-handed alpha
Helix 5
AA5
1
159 164Right-handed 310
Helix 6
AA6
1
210 213Right-handed 310
Helix 7
AA7
2
35 37Right-handed 310
Helix 8
AA8
2
56 60Right-handed 310
Helix 9
AA9
2
83 87Right-handed 310
Helix 10
AB1
2
89 98Right-handed alpha
Helix 11
AB2
2
142 146Right-handed 310
Helix 12
AB3
2
169 173Right-handed 310
Helix 13
AB4
2
178 185Right-handed 310
Helix 14
AB5
3
43 48Right-handed alpha
Helix 15
AB6
3
59 64Right-handed alpha
Helix 16
AB7
3
65 70Right-handed 310
Helix 17
AB8
3
99 106Right-handed alpha
Helix 18
AB9
3
145 152Right-handed alpha
Helix 19
AC1
4
35 39Right-handed 310
Helix 20
AC2
4
50 55Right-handed alpha
Back to top of page

There are 11 sheets in PDB entry 6RJF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
31 32first strand
Strand 2
3
164 169anti-parallel
Strand 3
3
108 121anti-parallel
Strand 4
3
208 226anti-parallel
Strand 5
3
71 74anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
51 53first strand
Strand 2
3
208 226anti-parallel
Strand 3
3
108 121anti-parallel
Strand 4
3
178 179anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
72 80first strand
Strand 2
1
232 250anti-parallel
Strand 3
1
110 127anti-parallel
Strand 4
1
192 193anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
179 183first strand
Strand 2
1
110 127anti-parallel
Strand 3
1
232 250anti-parallel
Strand 4
3
39 40anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
90 94first strand
Strand 2
1
218 223anti-parallel
Strand 3
1
141 147anti-parallel
Strand 4
1
169 173anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
1
199 201first strand
Strand 2
1
205 208anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
14 18first strand
Strand 2
2
21 25anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
32 33first strand
Strand 2
2
197 202parallel
Strand 3
2
99 111anti-parallel
Strand 4
2
239 255anti-parallel
Strand 5
2
64 71anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
2
153 154first strand
Strand 2
2
78 82anti-parallel
Strand 3
2
219 231anti-parallel
Strand 4
2
118 128anti-parallel
Strand 5
2
187 191anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
3
82 87first strand
Strand 2
3
190 195anti-parallel
Strand 3
3
130 136anti-parallel
Strand 4
3
153 158anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
4
4 7first strand
Strand 2
4
26 29anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il