Analysis of interatomic Contacts of Structural Units in PDB entry:
6RJN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RJN entry

There are 4 chains in PDB entry 6RJN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 3	GLY 504
B	GLN 3	GLY 504
C	GLN 3	GLY 504
D	GLN 3	GLY 504

There are 75 helices in PDB entry 6RJN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	45	56	Right-handed alpha
Helix 2	AA2	A	88	92	Right-handed 310
Helix 3	AA3	A	148	150	Right-handed 310
Helix 4	AA4	A	151	160	Right-handed alpha
Helix 5	AA5	A	169	180	Right-handed alpha
Helix 6	AA6	A	183	192	Right-handed alpha
Helix 7	AA7	A	193	196	Right-handed 310
Helix 8	AA8	A	199	203	Right-handed 310
Helix 9	AA9	A	237	248	Right-handed alpha
Helix 10	AB1	A	250	262	Right-handed alpha
Helix 11	AB2	A	276	282	Right-handed alpha
Helix 12	AB3	A	315	320	Right-handed alpha
Helix 13	AB4	A	339	358	Right-handed alpha
Helix 14	AB5	A	360	368	Right-handed 310
Helix 15	AB6	A	436	438	Right-handed 310
Helix 16	AB7	A	439	451	Right-handed alpha
Helix 17	AB8	A	454	468	Right-handed alpha
Helix 18	AB9	A	471	484	Right-handed alpha
Helix 19	AC1	A	486	501	Right-handed alpha
Helix 20	AC2	B	45	56	Right-handed alpha
Helix 21	AC3	B	88	92	Right-handed 310
Helix 22	AC4	B	150	160	Right-handed alpha
Helix 23	AC5	B	169	180	Right-handed alpha
Helix 24	AC6	B	183	192	Right-handed alpha
Helix 25	AC7	B	193	196	Right-handed 310
Helix 26	AC8	B	199	203	Right-handed 310
Helix 27	AC9	B	237	248	Right-handed alpha
Helix 28	AD1	B	250	262	Right-handed alpha
Helix 29	AD2	B	276	281	Right-handed alpha
Helix 30	AD3	B	315	320	Right-handed alpha
Helix 31	AD4	B	339	358	Right-handed alpha
Helix 32	AD5	B	360	368	Right-handed 310
Helix 33	AD6	B	436	438	Right-handed 310
Helix 34	AD7	B	439	451	Right-handed alpha
Helix 35	AD8	B	454	468	Right-handed alpha
Helix 36	AD9	B	471	484	Right-handed alpha
Helix 37	AE1	B	486	501	Right-handed alpha
Helix 38	AE2	C	45	56	Right-handed alpha
Helix 39	AE3	C	88	92	Right-handed 310
Helix 40	AE4	C	148	150	Right-handed 310
Helix 41	AE5	C	151	160	Right-handed alpha
Helix 42	AE6	C	169	180	Right-handed alpha
Helix 43	AE7	C	183	192	Right-handed alpha
Helix 44	AE8	C	193	196	Right-handed 310
Helix 45	AE9	C	199	203	Right-handed 310
Helix 46	AF1	C	237	248	Right-handed alpha
Helix 47	AF2	C	250	263	Right-handed alpha
Helix 48	AF3	C	276	283	Right-handed alpha
Helix 49	AF4	C	315	320	Right-handed alpha
Helix 50	AF5	C	339	358	Right-handed alpha
Helix 51	AF6	C	360	368	Right-handed 310
Helix 52	AF7	C	436	438	Right-handed 310
Helix 53	AF8	C	439	451	Right-handed alpha
Helix 54	AF9	C	454	468	Right-handed alpha
Helix 55	AG1	C	471	484	Right-handed alpha
Helix 56	AG2	C	486	501	Right-handed alpha
Helix 57	AG3	D	45	56	Right-handed alpha
Helix 58	AG4	D	88	92	Right-handed 310
Helix 59	AG5	D	148	150	Right-handed 310
Helix 60	AG6	D	151	160	Right-handed alpha
Helix 61	AG7	D	169	180	Right-handed alpha
Helix 62	AG8	D	183	191	Right-handed alpha
Helix 63	AG9	D	192	196	Right-handed 310
Helix 64	AH1	D	199	203	Right-handed 310
Helix 65	AH2	D	237	248	Right-handed alpha
Helix 66	AH3	D	250	262	Right-handed alpha
Helix 67	AH4	D	276	281	Right-handed alpha
Helix 68	AH5	D	315	320	Right-handed alpha
Helix 69	AH6	D	339	358	Right-handed alpha
Helix 70	AH7	D	360	368	Right-handed 310
Helix 71	AH8	D	436	438	Right-handed 310
Helix 72	AH9	D	439	451	Right-handed alpha
Helix 73	AI1	D	454	468	Right-handed alpha
Helix 74	AI2	D	471	484	Right-handed alpha
Helix 75	AI3	D	486	501	Right-handed alpha

There are 8 sheets in PDB entry 6RJN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	26	first strand
Strand 2	D	419	426	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	336	first strand
Strand 2	A	211	214	anti-parallel
Strand 3	A	220	229	anti-parallel
Strand 4	A	267	275	anti-parallel
Strand 5	A	302	311	anti-parallel
Strand 6	A	69	78	anti-parallel
Strand 7	A	97	105	anti-parallel
Strand 8	A	122	129	anti-parallel
Strand 9	A	132	139	anti-parallel
Strand 10	A	205	206	anti-parallel
Strand 11	A	220	229	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	424	426	first strand
Strand 2	D	21	23	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	23	first strand
Strand 2	C	424	426	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	211	214	anti-parallel
Strand 3	B	220	229	anti-parallel
Strand 4	B	267	275	anti-parallel
Strand 5	B	302	311	anti-parallel
Strand 6	B	69	78	anti-parallel
Strand 7	B	97	105	anti-parallel
Strand 8	B	122	129	anti-parallel
Strand 9	B	132	139	anti-parallel
Strand 10	B	205	206	anti-parallel
Strand 11	B	220	229	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	419	426	first strand
Strand 2	C	21	26	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	336	first strand
Strand 2	C	211	214	anti-parallel
Strand 3	C	220	229	anti-parallel
Strand 4	C	267	275	anti-parallel
Strand 5	C	302	311	anti-parallel
Strand 6	C	69	78	anti-parallel
Strand 7	C	97	105	anti-parallel
Strand 8	C	122	129	anti-parallel
Strand 9	C	132	139	anti-parallel
Strand 10	C	205	206	anti-parallel
Strand 11	C	220	229	anti-parallel

Back to list of sheets
Back to top of page

There are 11 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	336	first strand
Strand 2	D	211	214	anti-parallel
Strand 3	D	220	229	anti-parallel
Strand 4	D	267	275	anti-parallel
Strand 5	D	302	311	anti-parallel
Strand 6	D	69	78	anti-parallel
Strand 7	D	97	105	anti-parallel
Strand 8	D	122	129	anti-parallel
Strand 9	D	132	139	anti-parallel
Strand 10	D	205	206	anti-parallel
Strand 11	D	220	229	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RJN

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RJN