Analysis of interatomic Contacts of Structural Units in PDB entry:
6RJR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RJR entry

There are 3 chains in PDB entry 6RJR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE -3	ARG 502
B	GLY 2	ARG 502
C	HIS 3	ASN 238

There are 81 helices in PDB entry 6RJR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	43	54	Right-handed alpha
Helix 2	AA2	A	86	90	Right-handed 310
Helix 3	AA3	A	146	148	Right-handed 310
Helix 4	AA4	A	149	158	Right-handed alpha
Helix 5	AA5	A	167	177	Right-handed alpha
Helix 6	AA6	A	178	182	Right-handed 310
Helix 7	AA7	A	183	191	Right-handed alpha
Helix 8	AA8	A	192	196	Right-handed 310
Helix 9	AA9	A	199	203	Right-handed 310
Helix 10	AB1	A	237	248	Right-handed alpha
Helix 11	AB2	A	250	262	Right-handed alpha
Helix 12	AB3	A	276	283	Right-handed alpha
Helix 13	AB4	A	315	320	Right-handed alpha
Helix 14	AB5	A	339	357	Right-handed alpha
Helix 15	AB6	A	360	368	Right-handed 310
Helix 16	AB7	A	434	447	Right-handed alpha
Helix 17	AB8	A	448	451	Right-handed 310
Helix 18	AB9	A	453	467	Right-handed alpha
Helix 19	AC1	A	470	485	Right-handed alpha
Helix 20	AC2	A	485	500	Right-handed alpha
Helix 21	AC3	B	43	54	Right-handed alpha
Helix 22	AC4	B	86	90	Right-handed 310
Helix 23	AC5	B	146	148	Right-handed 310
Helix 24	AC6	B	149	158	Right-handed alpha
Helix 25	AC7	B	167	177	Right-handed alpha
Helix 26	AC8	B	178	182	Right-handed 310
Helix 27	AC9	B	183	192	Right-handed alpha
Helix 28	AD1	B	193	196	Right-handed 310
Helix 29	AD2	B	199	203	Right-handed 310
Helix 30	AD3	B	237	248	Right-handed alpha
Helix 31	AD4	B	250	262	Right-handed alpha
Helix 32	AD5	B	276	283	Right-handed alpha
Helix 33	AD6	B	315	320	Right-handed alpha
Helix 34	AD7	B	339	357	Right-handed alpha
Helix 35	AD8	B	360	368	Right-handed 310
Helix 36	AD9	B	434	447	Right-handed alpha
Helix 37	AE1	B	448	451	Right-handed 310
Helix 38	AE2	B	453	467	Right-handed alpha
Helix 39	AE3	B	470	485	Right-handed alpha
Helix 40	AE4	B	485	500	Right-handed alpha
Helix 41	AE5	C	43	54	Right-handed alpha
Helix 42	AE6	C	86	90	Right-handed 310
Helix 43	AE7	C	146	148	Right-handed 310
Helix 44	AE8	C	149	158	Right-handed alpha
Helix 45	AE9	C	167	177	Right-handed alpha
Helix 46	AF1	C	178	182	Right-handed 310
Helix 47	AF2	C	183	192	Right-handed alpha
Helix 48	AF3	C	193	196	Right-handed 310
Helix 49	AF4	C	199	203	Right-handed 310
Helix 50	AF5	C	237	248	Right-handed alpha
Helix 51	AF6	C	250	262	Right-handed alpha
Helix 52	AF7	C	276	282	Right-handed alpha
Helix 53	AF8	C	315	320	Right-handed alpha
Helix 54	AF9	C	339	357	Right-handed alpha
Helix 55	AG1	C	360	368	Right-handed 310
Helix 56	AG2	C	387	391	Right-handed 310
Helix 57	AG3	C	437	447	Right-handed alpha
Helix 58	AG4	C	448	451	Right-handed 310
Helix 59	AG5	C	453	467	Right-handed alpha
Helix 60	AG6	C	470	485	Right-handed alpha
Helix 61	AG7	C	485	500	Right-handed alpha
Helix 62	AG8	D	43	54	Right-handed alpha
Helix 63	AG9	D	86	90	Right-handed 310
Helix 64	AH1	D	146	148	Right-handed 310
Helix 65	AH2	D	149	158	Right-handed alpha
Helix 66	AH3	D	167	177	Right-handed alpha
Helix 67	AH4	D	178	182	Right-handed 310
Helix 68	AH5	D	183	191	Right-handed alpha
Helix 69	AH6	D	192	196	Right-handed 310
Helix 70	AH7	D	199	203	Right-handed 310
Helix 71	AH8	D	237	248	Right-handed alpha
Helix 72	AH9	D	250	262	Right-handed alpha
Helix 73	AI1	D	276	282	Right-handed alpha
Helix 74	AI2	D	315	320	Right-handed alpha
Helix 75	AI3	D	339	357	Right-handed alpha
Helix 76	AI4	D	360	368	Right-handed 310
Helix 77	AI5	D	437	447	Right-handed alpha
Helix 78	AI6	D	448	451	Right-handed 310
Helix 79	AI7	D	453	467	Right-handed alpha
Helix 80	AI8	D	470	485	Right-handed alpha
Helix 81	AI9	D	485	500	Right-handed alpha

There are 6 sheets in PDB entry 6RJR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	B	418	426	anti-parallel
Strand 3	C	418	426	anti-parallel
Strand 4	D	30	33	anti-parallel

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There are 11 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	334	336	first strand
Strand 2	A	211	214	anti-parallel
Strand 3	A	220	229	anti-parallel
Strand 4	A	267	275	anti-parallel
Strand 5	A	302	311	anti-parallel
Strand 6	A	67	76	anti-parallel
Strand 7	A	95	103	anti-parallel
Strand 8	A	120	127	anti-parallel
Strand 9	A	130	137	anti-parallel
Strand 10	A	205	206	anti-parallel
Strand 11	A	220	229	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	421	first strand
Strand 2	D	419	426	anti-parallel
Strand 3	C	30	33	anti-parallel

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There are 11 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	334	336	first strand
Strand 2	B	211	214	anti-parallel
Strand 3	B	220	229	anti-parallel
Strand 4	B	267	275	anti-parallel
Strand 5	B	302	311	anti-parallel
Strand 6	B	67	76	anti-parallel
Strand 7	B	95	103	anti-parallel
Strand 8	B	120	127	anti-parallel
Strand 9	B	130	137	anti-parallel
Strand 10	B	205	206	anti-parallel
Strand 11	B	220	229	anti-parallel

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There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	336	first strand
Strand 2	C	211	214	anti-parallel
Strand 3	C	220	229	anti-parallel
Strand 4	C	267	275	anti-parallel
Strand 5	C	302	311	anti-parallel
Strand 6	C	67	76	anti-parallel
Strand 7	C	95	103	anti-parallel
Strand 8	C	120	127	anti-parallel
Strand 9	C	130	137	anti-parallel
Strand 10	C	205	206	anti-parallel
Strand 11	C	220	229	anti-parallel

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There are 11 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	334	336	first strand
Strand 2	D	211	214	anti-parallel
Strand 3	D	220	229	anti-parallel
Strand 4	D	267	275	anti-parallel
Strand 5	D	302	311	anti-parallel
Strand 6	D	67	76	anti-parallel
Strand 7	D	95	103	anti-parallel
Strand 8	D	120	127	anti-parallel
Strand 9	D	130	137	anti-parallel
Strand 10	D	205	206	anti-parallel
Strand 11	D	220	229	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RJR

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RJR