Analysis of interatomic Contacts of Structural Units in PDB entry:
6RK0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RK0 entry

There are 2 chains in PDB entry 6RK0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 10GLY 223
B
 PRO 10GLY 223
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6RK0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
14 18Right-handed 310
Helix 2
AA2
A
22 24Right-handed 310
Helix 3
AA3
A
29 39Right-handed alpha
Helix 4
AA4
A
75 81Right-handed alpha
Helix 5
AA5
A
82 84Right-handed 310
Helix 6
AA6
A
101 105Right-handed 310
Helix 7
AA7
A
123 139Right-handed alpha
Helix 8
AA8
A
142 146Right-handed 310
Helix 9
AA9
A
150 156Right-handed alpha
Helix 10
AB1
A
179 183Right-handed 310
Helix 11
AB2
A
214 220Right-handed 310
Helix 12
AB3
B
14 18Right-handed 310
Helix 13
AB4
B
22 24Right-handed 310
Helix 14
AB5
B
29 40Right-handed alpha
Helix 15
AB6
B
75 81Right-handed alpha
Helix 16
AB7
B
82 84Right-handed 310
Helix 17
AB8
B
101 105Right-handed 310
Helix 18
AB9
B
123 139Right-handed alpha
Helix 19
AC1
B
142 146Right-handed 310
Helix 20
AC2
B
150 156Right-handed alpha
Helix 21
AC3
B
179 183Right-handed 310
Helix 22
AC4
B
214 220Right-handed 310
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There are 6 sheets in PDB entry 6RK0. Click on sheet of interest to get list of strands forming it: A, B, C, D, E, F,

There are 5 strands in A sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
52 59first strand
Strand 2
A
42 49anti-parallel
Strand 3
A
86 97anti-parallel
Strand 4
A
106 116anti-parallel
Strand 5
A
167 172anti-parallel
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There are 3 strands in B sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
61 63first strand
Strand 2
A
66 72anti-parallel
Strand 3
A
157 163anti-parallel
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There are 2 strands in C sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
95 98first strand
Strand 2
A
190 193anti-parallel
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There are 5 strands in D sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
52 59first strand
Strand 2
B
42 49anti-parallel
Strand 3
B
86 97anti-parallel
Strand 4
B
106 116anti-parallel
Strand 5
B
167 172anti-parallel
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There are 3 strands in E sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
61 63first strand
Strand 2
B
66 72anti-parallel
Strand 3
B
157 163anti-parallel
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There are 2 strands in F sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
95 98first strand
Strand 2
B
190 193anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il