Analysis of interatomic Contacts of Structural Units in PDB entry:
6RK2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RK2 entry

There are 2 chains in PDB entry 6RK2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6LYS 459
B
 MET 9LYS 459
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6RK2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 17Right-handed alpha
Helix 2
AA2
A
30 35Right-handed alpha
Helix 3
AA3
A
46 54Right-handed alpha
Helix 4
AA4
A
58 62Right-handed 310
Helix 5
AA5
A
69 85Right-handed alpha
Helix 6
AA6
A
94 99Right-handed alpha
Helix 7
AA7
A
107 125Right-handed alpha
Helix 8
AA8
A
138 148Right-handed 310
Helix 9
AA9
A
149 168Right-handed alpha
Helix 10
AB1
A
179 189Right-handed alpha
Helix 11
AB2
A
199 225Right-handed alpha
Helix 12
AB3
A
245 260Right-handed alpha
Helix 13
AB4
A
260 270Right-handed alpha
Helix 14
AB5
A
273 281Right-handed alpha
Helix 15
AB6
A
282 284Right-handed 310
Helix 16
AB7
A
290 296Right-handed alpha
Helix 17
AB8
A
344 358Right-handed alpha
Helix 18
AB9
A
383 403Right-handed alpha
Helix 19
AC1
A
420 427Right-handed 310
Helix 20
AC2
A
444 455Right-handed alpha
Helix 21
AC3
B
11 17Right-handed alpha
Helix 22
AC4
B
30 35Right-handed alpha
Helix 23
AC5
B
46 54Right-handed alpha
Helix 24
AC6
B
58 62Right-handed 310
Helix 25
AC7
B
69 84Right-handed alpha
Helix 26
AC8
B
94 99Right-handed alpha
Helix 27
AC9
B
107 124Right-handed alpha
Helix 28
AD1
B
138 149Right-handed 310
Helix 29
AD2
B
150 168Right-handed alpha
Helix 30
AD3
B
179 189Right-handed alpha
Helix 31
AD4
B
199 225Right-handed alpha
Helix 32
AD5
B
245 260Right-handed alpha
Helix 33
AD6
B
260 270Right-handed alpha
Helix 34
AD7
B
273 281Right-handed alpha
Helix 35
AD8
B
282 284Right-handed 310
Helix 36
AD9
B
290 296Right-handed alpha
Helix 37
AE1
B
344 358Right-handed alpha
Helix 38
AE2
B
383 403Right-handed alpha
Helix 39
AE3
B
420 424Right-handed 310
Helix 40
AE4
B
444 456Right-handed alpha
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There are 6 sheets in PDB entry 6RK2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 28first strand
Strand 2
A
88 92parallel
Strand 3
A
127 133parallel
Strand 4
A
173 178parallel
Strand 5
A
230 234parallel
Strand 6
A
301 305parallel
Strand 7
A
362 368parallel
Strand 8
A
407 413parallel
Strand 9
A
24 28parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
239 241first strand
Strand 2
A
310 314parallel
Strand 3
A
325 327anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
432 434first strand
Strand 2
A
441 443anti-parallel
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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 28first strand
Strand 2
B
88 92parallel
Strand 3
B
127 133parallel
Strand 4
B
173 178parallel
Strand 5
B
230 234parallel
Strand 6
B
301 305parallel
Strand 7
B
362 367parallel
Strand 8
B
407 413parallel
Strand 9
B
24 28parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
239 241first strand
Strand 2
B
310 314parallel
Strand 3
B
325 327anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
432 434first strand
Strand 2
B
441 443anti-parallel
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