Analysis of interatomic Contacts of Structural Units in PDB entry:
6RKF

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RKF entry

There are 4 chains in PDB entry 6RKF (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	PRO 335
B	ASP 2	PRO 335
C	MET 1	PRO 335
D	THR 3	VAL 284

There are 75 helices in PDB entry 6RKF. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	12	24	Right-handed alpha
Helix 2	AA2	A	60	80	Right-handed alpha
Helix 3	AA3	A	83	88	Right-handed alpha
Helix 4	AA4	A	120	125	Right-handed alpha
Helix 5	AA5	A	142	158	Right-handed alpha
Helix 6	AA6	A	168	173	Right-handed 310
Helix 7	AA7	A	183	185	Right-handed 310
Helix 8	AA8	A	186	191	Right-handed alpha
Helix 9	AA9	A	247	262	Right-handed alpha
Helix 10	AB1	A	263	267	Right-handed 310
Helix 11	AB2	A	306	310	Right-handed 310
Helix 12	AB3	A	313	334	Right-handed alpha
Helix 13	AB4	B	14	24	Right-handed alpha
Helix 14	AB5	B	60	81	Right-handed alpha
Helix 15	AB6	B	83	88	Right-handed alpha
Helix 16	AB7	B	107	111	Right-handed 310
Helix 17	AB8	B	142	158	Right-handed alpha
Helix 18	AB9	B	168	173	Right-handed 310
Helix 19	AC1	B	183	189	Right-handed 310
Helix 20	AC2	B	247	262	Right-handed alpha
Helix 21	AC3	B	263	268	Right-handed 310
Helix 22	AC4	B	310	312	Right-handed 310
Helix 23	AC5	B	313	334	Right-handed alpha
Helix 24	AC6	C	12	26	Right-handed alpha
Helix 25	AC7	C	60	80	Right-handed alpha
Helix 26	AC8	C	83	88	Right-handed alpha
Helix 27	AC9	C	120	125	Right-handed alpha
Helix 28	AD1	C	142	157	Right-handed alpha
Helix 29	AD2	C	168	173	Right-handed 310
Helix 30	AD3	C	183	185	Right-handed 310
Helix 31	AD4	C	186	191	Right-handed alpha
Helix 32	AD5	C	247	262	Right-handed alpha
Helix 33	AD6	C	263	267	Right-handed 310
Helix 34	AD7	C	310	314	Right-handed 310
Helix 35	AD8	C	315	334	Right-handed alpha
Helix 36	AD9	D	12	24	Right-handed alpha
Helix 37	AE1	D	38	41	Right-handed 310
Helix 38	AE2	D	42	47	Right-handed alpha
Helix 39	AE3	D	60	80	Right-handed alpha
Helix 40	AE4	D	83	88	Right-handed alpha
Helix 41	AE5	D	107	111	Right-handed 310
Helix 42	AE6	D	122	127	Right-handed 310
Helix 43	AE7	D	142	158	Right-handed alpha
Helix 44	AE8	D	168	172	Right-handed 310
Helix 45	AE9	D	183	185	Right-handed 310
Helix 46	AF1	D	186	191	Right-handed alpha
Helix 47	AF2	D	247	259	Right-handed alpha
Helix 48	AF3	D	262	267	Right-handed 310
Helix 49	AF4	D	306	312	Right-handed 310
Helix 50	AF5	D	313	334	Right-handed alpha
Helix 51	AF6	E	12	23	Right-handed alpha
Helix 52	AF7	E	38	41	Right-handed 310
Helix 53	AF8	E	42	47	Right-handed alpha
Helix 54	AF9	E	60	80	Right-handed alpha
Helix 55	AG1	E	83	88	Right-handed alpha
Helix 56	AG2	E	120	125	Right-handed alpha
Helix 57	AG3	E	142	155	Right-handed alpha
Helix 58	AG4	E	156	158	Right-handed 310
Helix 59	AG5	E	186	192	Right-handed alpha
Helix 60	AG6	E	247	262	Right-handed alpha
Helix 61	AG7	E	263	268	Right-handed 310
Helix 62	AG8	E	306	312	Right-handed 310
Helix 63	AG9	E	313	334	Right-handed alpha
Helix 64	AH1	F	12	26	Right-handed alpha
Helix 65	AH2	F	60	81	Right-handed alpha
Helix 66	AH3	F	83	88	Right-handed alpha
Helix 67	AH4	F	108	112	Right-handed 310
Helix 68	AH5	F	122	126	Right-handed 310
Helix 69	AH6	F	142	156	Right-handed alpha
Helix 70	AH7	F	168	173	Right-handed 310
Helix 71	AH8	F	186	192	Right-handed alpha
Helix 72	AH9	F	247	262	Right-handed alpha
Helix 73	AI1	F	263	268	Right-handed 310
Helix 74	AI2	F	310	312	Right-handed 310
Helix 75	AI3	F	313	334	Right-handed alpha

There are 16 sheets in PDB entry 6RKF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 14 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	290	first strand
Strand 2	A	299	304	anti-parallel
Strand 3	A	178	181	parallel
Strand 4	A	6	9	parallel
Strand 5	A	33	34	parallel
Strand 6	A	161	163	parallel
Strand 7	D	269	280	parallel
Strand 8	D	197	207	anti-parallel
Strand 9	D	231	234	anti-parallel
Strand 10	D	223	225	anti-parallel
Strand 11	D	215	216	anti-parallel
Strand 12	D	89	98	parallel
Strand 13	D	132	141	anti-parallel
Strand 14	D	114	118	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	285	290	first strand
Strand 2	A	299	304	anti-parallel
Strand 3	A	178	181	parallel
Strand 4	A	6	9	parallel
Strand 5	A	33	34	parallel
Strand 6	A	161	163	parallel
Strand 7	D	269	280	parallel
Strand 8	D	197	207	anti-parallel
Strand 9	D	238	239	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	132	141	anti-parallel
Strand 3	A	89	98	anti-parallel
Strand 4	A	213	216	parallel
Strand 5	A	223	225	anti-parallel
Strand 6	A	231	234	anti-parallel
Strand 7	A	197	207	anti-parallel
Strand 8	A	238	239	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	114	118	first strand
Strand 2	A	132	141	anti-parallel
Strand 3	A	89	98	anti-parallel
Strand 4	A	213	216	parallel
Strand 5	A	223	225	anti-parallel
Strand 6	A	231	234	anti-parallel
Strand 7	A	197	207	anti-parallel
Strand 8	A	269	280	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	161	163	first strand
Strand 2	B	32	35	parallel
Strand 3	B	6	9	parallel
Strand 4	B	178	181	parallel
Strand 5	B	297	302	parallel
Strand 6	B	288	292	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	132	140	anti-parallel
Strand 3	B	90	98	anti-parallel
Strand 4	B	213	217	parallel
Strand 5	B	223	225	anti-parallel
Strand 6	B	231	234	anti-parallel
Strand 7	B	197	207	anti-parallel
Strand 8	B	238	239	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	118	first strand
Strand 2	B	132	140	anti-parallel
Strand 3	B	90	98	anti-parallel
Strand 4	B	213	217	parallel
Strand 5	B	223	225	anti-parallel
Strand 6	B	231	234	anti-parallel
Strand 7	B	197	207	anti-parallel
Strand 8	B	269	280	anti-parallel

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There are 13 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	132	141	anti-parallel
Strand 3	C	89	98	anti-parallel
Strand 4	C	214	216	parallel
Strand 5	C	223	225	anti-parallel
Strand 6	C	231	234	anti-parallel
Strand 7	C	197	207	anti-parallel
Strand 8	C	269	291	anti-parallel
Strand 9	C	298	306	anti-parallel
Strand 10	C	178	181	parallel
Strand 11	C	6	9	parallel
Strand 12	C	32	35	parallel
Strand 13	C	161	163	parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	114	118	first strand
Strand 2	C	132	141	anti-parallel
Strand 3	C	89	98	anti-parallel
Strand 4	C	214	216	parallel
Strand 5	C	223	225	anti-parallel
Strand 6	C	231	234	anti-parallel
Strand 7	C	197	207	anti-parallel
Strand 8	C	238	239	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	161	162	first strand
Strand 2	D	33	34	parallel
Strand 3	D	6	9	parallel
Strand 4	D	178	181	parallel
Strand 5	D	296	304	parallel
Strand 6	D	285	293	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	32	34	first strand
Strand 2	E	6	9	parallel
Strand 3	E	178	181	parallel
Strand 4	E	298	302	parallel
Strand 5	E	288	291	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	118	first strand
Strand 2	E	132	140	anti-parallel
Strand 3	E	90	98	anti-parallel
Strand 4	E	213	216	parallel
Strand 5	E	223	226	anti-parallel
Strand 6	E	231	234	anti-parallel
Strand 7	E	197	206	anti-parallel
Strand 8	E	238	239	anti-parallel

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There are 8 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	114	118	first strand
Strand 2	E	132	140	anti-parallel
Strand 3	E	90	98	anti-parallel
Strand 4	E	213	216	parallel
Strand 5	E	223	226	anti-parallel
Strand 6	E	231	234	anti-parallel
Strand 7	E	197	206	anti-parallel
Strand 8	E	273	280	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	161	163	first strand
Strand 2	F	32	35	parallel
Strand 3	F	6	8	parallel
Strand 4	F	178	181	parallel
Strand 5	F	298	302	parallel
Strand 6	F	287	291	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	132	141	anti-parallel
Strand 3	F	89	98	anti-parallel
Strand 4	F	213	216	parallel
Strand 5	F	223	225	anti-parallel
Strand 6	F	231	234	anti-parallel
Strand 7	F	197	206	anti-parallel
Strand 8	F	238	239	anti-parallel

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There are 8 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	114	118	first strand
Strand 2	F	132	141	anti-parallel
Strand 3	F	89	98	anti-parallel
Strand 4	F	213	216	parallel
Strand 5	F	223	225	anti-parallel
Strand 6	F	231	234	anti-parallel
Strand 7	F	197	206	anti-parallel
Strand 8	F	273	280	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RKF

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RKF