Analysis of interatomic Contacts of Structural Units in PDB entry:
6RKJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RKJ entry

There is 1 chain in PDB entry 6RKJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 39LYS 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 6RKJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 67Right-handed alpha
Helix 2
AA2
A
78 92Right-handed alpha
Helix 3
AA3
A
102 104Right-handed 310
Helix 4
AA4
A
105 112Right-handed alpha
Helix 5
AA5
A
118 124Right-handed alpha
Helix 6
AA6
A
129 133Right-handed 310
Helix 7
AA7
A
134 140Right-handed alpha
Helix 8
AA8
A
169 176Right-handed alpha
Helix 9
AA9
A
187 199Right-handed alpha
Helix 10
AB1
A
216 228Right-handed alpha
Helix 11
AB2
A
244 260Right-handed alpha
Helix 12
AB3
A
266 273Right-handed alpha
Helix 13
AB4
A
274 281Right-handed alpha
Helix 14
AB5
A
290 292Right-handed 310
Helix 15
AB6
A
293 301Right-handed alpha
Helix 16
AB7
A
335 348Right-handed alpha
Helix 17
AB8
A
349 359Right-handed alpha
Helix 18
AB9
A
366 376Right-handed alpha
Helix 19
AC1
A
384 393Right-handed alpha
Helix 20
AC2
A
398 403Right-handed 310
Helix 21
AC3
A
406 415Right-handed alpha
Helix 22
AC4
A
416 421Right-handed alpha
Helix 23
AC5
A
425 452Right-handed alpha
Back to top of page

There are 4 sheets in PDB entry 6RKJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 77first strand
Strand 2
A
40 47parallel
Strand 3
A
98 101parallel
Strand 4
A
326 329anti-parallel
Strand 5
A
156 157anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
152 153anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
320 323anti-parallel
Strand 3
A
395 396parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
286 289first strand
Strand 2
A
164 168anti-parallel
Strand 3
A
305 308anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il