Analysis of interatomic Contacts of Structural Units in PDB entry:
6RKO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RKO entry

There are 4 chains in PDB entry 6RKO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 ILE 2TYR 379
A
 LEU 2GLN 513
H
 THR 3HIS 29
X
 TYR 3GLU 28
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 6RKO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
3 26Right-handed alpha
Helix 2
AA2
B
26 36Right-handed alpha
Helix 3
AA3
B
42 54Right-handed alpha
Helix 4
AA4
B
56 61Right-handed alpha
Helix 5
AA5
B
61 75Right-handed alpha
Helix 6
AA6
B
75 86Right-handed alpha
Helix 7
AA7
B
86 98Right-handed alpha
Helix 8
AA8
B
98 107Right-handed alpha
Helix 9
AA9
B
112 142Right-handed alpha
Helix 10
AB1
B
160 164Right-handed 310
Helix 11
AB2
B
166 192Right-handed alpha
Helix 12
AB3
B
193 224Right-handed alpha
Helix 13
AB4
B
256 262Right-handed alpha
Helix 14
AB5
B
263 265Right-handed 310
Helix 15
AB6
B
266 285Right-handed alpha
Helix 16
AB7
B
287 311Right-handed alpha
Helix 17
AB8
B
333 362Right-handed alpha
Helix 18
AB9
B
367 374Right-handed alpha
Helix 19
AC1
A
3 20Right-handed alpha
Helix 20
AC2
A
22 44Right-handed alpha
Helix 21
AC3
A
46 80Right-handed alpha
Helix 22
AC4
A
81 103Right-handed alpha
Helix 23
AC5
A
103 117Right-handed alpha
Helix 24
AC6
A
122 153Right-handed alpha
Helix 25
AC7
A
170 176Right-handed alpha
Helix 26
AC8
A
177 210Right-handed alpha
Helix 27
AC9
A
212 237Right-handed alpha
Helix 28
AD1
A
250 257Right-handed alpha
Helix 29
AD2
A
312 333Right-handed alpha
Helix 30
AD3
A
341 346Right-handed alpha
Helix 31
AD4
A
347 349Right-handed 310
Helix 32
AD5
A
350 355Right-handed alpha
Helix 33
AD6
A
356 358Right-handed 310
Helix 34
AD7
A
363 367Right-handed 310
Helix 35
AD8
A
368 378Right-handed alpha
Helix 36
AD9
A
382 413Right-handed alpha
Helix 37
AE1
A
419 429Right-handed alpha
Helix 38
AE2
A
430 446Right-handed alpha
Helix 39
AE3
A
459 463Right-handed alpha
Helix 40
AE4
A
467 500Right-handed alpha
Helix 41
AE5
A
501 505Right-handed 310
Helix 42
AE6
A
509 513Right-handed 310
Helix 43
AE7
H
4 28Right-handed alpha
Helix 44
AE8
X
5 8Right-handed 310
Helix 45
AE9
X
9 28Right-handed alpha
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There are 5 sheets in PDB entry 6RKO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
147 149first strand
Strand 2
B
155 157anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 231first strand
Strand 2
B
248 252anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 315first strand
Strand 2
B
325 326anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 160first strand
Strand 2
A
165 168anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
451 453first strand
Strand 2
A
457 458anti-parallel
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