Analysis of interatomic Contacts of Structural Units in PDB entry:
6RKV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RKV entry

There are 8 chains in PDB entry 6RKV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 8	ASN 524
B	GLY 402	ALA 790
C	ILE 8	ASN 524
D	GLY 402	ALA 790
F	A 1	G 14
E	A 1	G 14
G	G 15	T 32
H	G 15	T 32

There are 70 helices in PDB entry 6RKV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	32	Right-handed alpha
Helix 2	AA2	A	42	56	Right-handed alpha
Helix 3	AA3	A	66	77	Right-handed alpha
Helix 4	AA4	A	82	94	Right-handed alpha
Helix 5	AA5	A	95	98	Right-handed 310
Helix 6	AA6	A	130	134	Right-handed 310
Helix 7	AA7	A	164	169	Right-handed alpha
Helix 8	AA8	A	186	200	Right-handed alpha
Helix 9	AA9	A	204	212	Right-handed alpha
Helix 10	AB1	A	225	235	Right-handed alpha
Helix 11	AB2	A	269	283	Right-handed alpha
Helix 12	AB3	A	313	324	Right-handed alpha
Helix 13	AB4	A	346	389	Right-handed alpha
Helix 14	AB5	A	390	400	Right-handed alpha
Helix 15	AB6	A	402	413	Right-handed alpha
Helix 16	AB7	A	451	460	Right-handed alpha
Helix 17	AB8	A	462	466	Right-handed 310
Helix 18	AB9	A	469	494	Right-handed alpha
Helix 19	AC1	A	494	513	Right-handed alpha
Helix 20	AC2	B	425	436	Right-handed alpha
Helix 21	AC3	B	465	472	Right-handed alpha
Helix 22	AC4	B	500	518	Right-handed alpha
Helix 23	AC5	B	518	524	Right-handed alpha
Helix 24	AC6	B	548	561	Right-handed alpha
Helix 25	AC7	B	577	598	Right-handed alpha
Helix 26	AC8	B	602	609	Right-handed alpha
Helix 27	AC9	B	616	621	Right-handed 310
Helix 28	AD1	B	622	641	Right-handed alpha
Helix 29	AD2	B	678	684	Right-handed alpha
Helix 30	AD3	B	684	699	Right-handed alpha
Helix 31	AD4	B	718	732	Right-handed alpha
Helix 32	AD5	B	741	745	Right-handed 310
Helix 33	AD6	B	746	755	Right-handed alpha
Helix 34	AD7	B	772	778	Right-handed alpha
Helix 35	AD8	B	780	786	Right-handed alpha
Helix 36	AD9	C	15	32	Right-handed alpha
Helix 37	AE1	C	42	56	Right-handed alpha
Helix 38	AE2	C	66	77	Right-handed alpha
Helix 39	AE3	C	82	94	Right-handed alpha
Helix 40	AE4	C	95	98	Right-handed 310
Helix 41	AE5	C	130	134	Right-handed 310
Helix 42	AE6	C	164	169	Right-handed alpha
Helix 43	AE7	C	186	200	Right-handed alpha
Helix 44	AE8	C	204	212	Right-handed alpha
Helix 45	AE9	C	225	235	Right-handed alpha
Helix 46	AF1	C	269	283	Right-handed alpha
Helix 47	AF2	C	313	324	Right-handed alpha
Helix 48	AF3	C	346	389	Right-handed alpha
Helix 49	AF4	C	390	400	Right-handed alpha
Helix 50	AF5	C	402	413	Right-handed alpha
Helix 51	AF6	C	451	460	Right-handed alpha
Helix 52	AF7	C	462	466	Right-handed 310
Helix 53	AF8	C	469	494	Right-handed alpha
Helix 54	AF9	C	494	513	Right-handed alpha
Helix 55	AG1	D	425	436	Right-handed alpha
Helix 56	AG2	D	465	472	Right-handed alpha
Helix 57	AG3	D	500	518	Right-handed alpha
Helix 58	AG4	D	518	524	Right-handed alpha
Helix 59	AG5	D	548	561	Right-handed alpha
Helix 60	AG6	D	577	598	Right-handed alpha
Helix 61	AG7	D	602	609	Right-handed alpha
Helix 62	AG8	D	616	621	Right-handed 310
Helix 63	AG9	D	622	641	Right-handed alpha
Helix 64	AH1	D	678	684	Right-handed alpha
Helix 65	AH2	D	684	699	Right-handed alpha
Helix 66	AH3	D	718	732	Right-handed alpha
Helix 67	AH4	D	741	745	Right-handed 310
Helix 68	AH5	D	746	755	Right-handed alpha
Helix 69	AH6	D	772	778	Right-handed alpha
Helix 70	AH7	D	780	786	Right-handed alpha

There are 22 sheets in PDB entry 6RKV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	124	127	anti-parallel
Strand 3	A	103	106	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	154	156	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	172	174	first strand
Strand 2	A	179	181	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	242	243	anti-parallel
Strand 3	A	222	223	anti-parallel
Strand 4	A	520	521	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	331	333	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	250	first strand
Strand 2	A	257	263	anti-parallel
Strand 3	A	303	307	anti-parallel
Strand 4	A	289	294	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	335	337	first strand
Strand 2	A	342	344	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	446	first strand
Strand 2	B	419	424	parallel
Strand 3	B	492	495	parallel
Strand 4	B	527	529	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	546	first strand
Strand 2	B	535	539	anti-parallel
Strand 3	B	735	738	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	566	first strand
Strand 2	B	707	708	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	653	first strand
Strand 2	B	660	667	anti-parallel
Strand 3	B	672	676	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	124	127	anti-parallel
Strand 3	C	103	106	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	154	156	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	172	174	first strand
Strand 2	C	179	181	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	328	first strand
Strand 2	C	242	243	anti-parallel
Strand 3	C	222	223	anti-parallel
Strand 4	C	520	521	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	239	first strand
Strand 2	C	331	333	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	250	first strand
Strand 2	C	257	263	anti-parallel
Strand 3	C	303	307	anti-parallel
Strand 4	C	289	294	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	335	337	first strand
Strand 2	C	342	344	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	446	first strand
Strand 2	D	419	424	parallel
Strand 3	D	492	495	parallel
Strand 4	D	527	529	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	542	546	first strand
Strand 2	D	535	539	anti-parallel
Strand 3	D	735	738	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	565	566	first strand
Strand 2	D	707	708	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	653	first strand
Strand 2	D	660	667	anti-parallel
Strand 3	D	672	676	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RKV

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RKV