Analysis of interatomic Contacts of Structural Units in PDB entry:
6RKW

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RKW entry

There are 8 chains in PDB entry 6RKW (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 8	GLU 841
C	ILE 8	GLU 841
B	SER 2	ALA 790
D	SER 2	ALA 790
F	T 31	G 88
E	T 31	G 88
G	G 1	A 62
H	G 1	A 62

There are105 helices in PDB entry 6RKW. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	14	32	Right-handed alpha
Helix 2	AA2	A	42	56	Right-handed alpha
Helix 3	AA3	A	66	77	Right-handed alpha
Helix 4	AA4	A	82	94	Right-handed alpha
Helix 5	AA5	A	95	98	Right-handed 310
Helix 6	AA6	A	130	135	Right-handed alpha
Helix 7	AA7	A	164	169	Right-handed alpha
Helix 8	AA8	A	186	200	Right-handed alpha
Helix 9	AA9	A	204	212	Right-handed alpha
Helix 10	AB1	A	226	235	Right-handed alpha
Helix 11	AB2	A	269	283	Right-handed alpha
Helix 12	AB3	A	313	324	Right-handed alpha
Helix 13	AB4	A	346	389	Right-handed alpha
Helix 14	AB5	A	390	400	Right-handed alpha
Helix 15	AB6	A	402	413	Right-handed alpha
Helix 16	AB7	A	451	460	Right-handed alpha
Helix 17	AB8	A	469	494	Right-handed alpha
Helix 18	AB9	A	494	513	Right-handed alpha
Helix 19	AC1	A	529	534	Right-handed alpha
Helix 20	AC2	A	554	562	Right-handed alpha
Helix 21	AC3	A	566	571	Right-handed alpha
Helix 22	AC4	A	619	623	Right-handed alpha
Helix 23	AC5	A	661	664	Right-handed 310
Helix 24	AC6	A	709	711	Right-handed 310
Helix 25	AC7	A	810	812	Right-handed 310
Helix 26	AC8	C	14	32	Right-handed alpha
Helix 27	AC9	C	42	56	Right-handed alpha
Helix 28	AD1	C	66	77	Right-handed alpha
Helix 29	AD2	C	82	94	Right-handed alpha
Helix 30	AD3	C	95	98	Right-handed 310
Helix 31	AD4	C	130	135	Right-handed alpha
Helix 32	AD5	C	164	169	Right-handed alpha
Helix 33	AD6	C	186	200	Right-handed alpha
Helix 34	AD7	C	204	212	Right-handed alpha
Helix 35	AD8	C	226	235	Right-handed alpha
Helix 36	AD9	C	269	283	Right-handed alpha
Helix 37	AE1	C	313	324	Right-handed alpha
Helix 38	AE2	C	346	389	Right-handed alpha
Helix 39	AE3	C	390	400	Right-handed alpha
Helix 40	AE4	C	402	413	Right-handed alpha
Helix 41	AE5	C	451	460	Right-handed alpha
Helix 42	AE6	C	469	494	Right-handed alpha
Helix 43	AE7	C	494	513	Right-handed alpha
Helix 44	AE8	C	525	533	Right-handed alpha
Helix 45	AE9	C	554	562	Right-handed alpha
Helix 46	AF1	C	568	572	Right-handed 310
Helix 47	AF2	C	661	664	Right-handed 310
Helix 48	AF3	C	709	711	Right-handed 310
Helix 49	AF4	C	810	812	Right-handed 310
Helix 50	AF5	B	6	10	Right-handed 310
Helix 51	AF6	B	16	22	Right-handed alpha
Helix 52	AF7	B	23	28	Right-handed alpha
Helix 53	AF8	B	33	52	Right-handed alpha
Helix 54	AF9	B	89	97	Right-handed alpha
Helix 55	AG1	B	118	126	Right-handed alpha
Helix 56	AG2	B	183	198	Right-handed alpha
Helix 57	AG3	B	221	230	Right-handed alpha
Helix 58	AG4	B	279	300	Right-handed alpha
Helix 59	AG5	B	301	307	Right-handed alpha
Helix 60	AG6	B	311	316	Right-handed alpha
Helix 61	AG7	B	342	364	Right-handed alpha
Helix 62	AG8	B	364	396	Right-handed alpha
Helix 63	AG9	B	425	436	Right-handed alpha
Helix 64	AH1	B	465	472	Right-handed alpha
Helix 65	AH2	B	500	518	Right-handed alpha
Helix 66	AH3	B	518	524	Right-handed alpha
Helix 67	AH4	B	548	561	Right-handed alpha
Helix 68	AH5	B	577	598	Right-handed alpha
Helix 69	AH6	B	602	609	Right-handed alpha
Helix 70	AH7	B	616	621	Right-handed 310
Helix 71	AH8	B	622	641	Right-handed alpha
Helix 72	AH9	B	678	684	Right-handed alpha
Helix 73	AI1	B	684	699	Right-handed alpha
Helix 74	AI2	B	718	731	Right-handed alpha
Helix 75	AI3	B	741	745	Right-handed 310
Helix 76	AI4	B	746	754	Right-handed alpha
Helix 77	AI5	B	781	786	Right-handed alpha
Helix 78	AI6	D	6	10	Right-handed 310
Helix 79	AI7	D	16	22	Right-handed alpha
Helix 80	AI8	D	23	28	Right-handed alpha
Helix 81	AI9	D	33	52	Right-handed alpha
Helix 82	AJ1	D	89	97	Right-handed alpha
Helix 83	AJ2	D	118	126	Right-handed alpha
Helix 84	AJ3	D	183	197	Right-handed alpha
Helix 85	AJ4	D	221	231	Right-handed alpha
Helix 86	AJ5	D	279	301	Right-handed alpha
Helix 87	AJ6	D	302	307	Right-handed alpha
Helix 88	AJ7	D	311	316	Right-handed alpha
Helix 89	AJ8	D	342	364	Right-handed alpha
Helix 90	AJ9	D	364	395	Right-handed alpha
Helix 91	AK1	D	425	436	Right-handed alpha
Helix 92	AK2	D	465	472	Right-handed alpha
Helix 93	AK3	D	500	518	Right-handed alpha
Helix 94	AK4	D	518	524	Right-handed alpha
Helix 95	AK5	D	548	561	Right-handed alpha
Helix 96	AK6	D	577	598	Right-handed alpha
Helix 97	AK7	D	602	609	Right-handed alpha
Helix 98	AK8	D	616	621	Right-handed 310
Helix 99	AK9	D	622	641	Right-handed alpha
Helix 100	AL1	D	678	684	Right-handed alpha
Helix 101	AL2	D	684	699	Right-handed alpha
Helix 102	AL3	D	718	731	Right-handed alpha
Helix 103	AL4	D	741	745	Right-handed 310
Helix 104	AL5	D	746	754	Right-handed alpha
Helix 105	AL6	D	781	786	Right-handed alpha

There are 42 sheets in PDB entry 6RKW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	124	127	anti-parallel
Strand 3	A	103	106	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	145	147	first strand
Strand 2	A	154	156	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	327	328	first strand
Strand 2	A	242	243	anti-parallel
Strand 3	A	222	223	anti-parallel
Strand 4	A	520	521	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	239	first strand
Strand 2	A	331	333	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	247	first strand
Strand 2	A	258	263	anti-parallel
Strand 3	A	303	307	anti-parallel
Strand 4	A	289	294	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	336	337	first strand
Strand 2	A	342	343	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	578	584	first strand
Strand 2	A	539	544	anti-parallel
Strand 3	A	548	553	anti-parallel
Strand 4	A	617	618	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	631	637	first strand
Strand 2	A	589	594	anti-parallel
Strand 3	A	598	603	anti-parallel
Strand 4	A	671	672	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	682	688	first strand
Strand 2	A	645	650	anti-parallel
Strand 3	A	654	659	anti-parallel
Strand 4	A	721	722	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	703	707	first strand
Strand 2	A	693	698	anti-parallel
Strand 3	A	732	736	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	783	789	first strand
Strand 2	A	743	748	anti-parallel
Strand 3	A	752	756	anti-parallel
Strand 4	A	822	823	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	804	808	first strand
Strand 2	A	794	799	anti-parallel
Strand 3	A	833	838	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	124	127	anti-parallel
Strand 3	C	103	106	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	145	147	first strand
Strand 2	C	154	156	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	327	328	first strand
Strand 2	C	242	243	anti-parallel
Strand 3	C	222	223	anti-parallel
Strand 4	C	520	521	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	237	239	first strand
Strand 2	C	331	333	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	249	first strand
Strand 2	C	258	263	anti-parallel
Strand 3	C	303	307	anti-parallel
Strand 4	C	289	294	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	336	337	first strand
Strand 2	C	342	343	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	578	584	first strand
Strand 2	C	539	544	anti-parallel
Strand 3	C	548	553	anti-parallel
Strand 4	C	617	618	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	631	637	first strand
Strand 2	C	589	594	anti-parallel
Strand 3	C	598	603	anti-parallel
Strand 4	C	671	672	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	682	688	first strand
Strand 2	C	645	650	anti-parallel
Strand 3	C	654	659	anti-parallel
Strand 4	C	721	722	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	732	735	first strand
Strand 2	C	693	698	anti-parallel
Strand 3	C	702	707	anti-parallel
Strand 4	C	771	772	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	783	789	first strand
Strand 2	C	743	748	anti-parallel
Strand 3	C	752	756	anti-parallel
Strand 4	C	822	823	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	804	808	first strand
Strand 2	C	794	799	anti-parallel
Strand 3	C	833	838	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	11	12	first strand
Strand 2	D	100	101	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	139	146	anti-parallel
Strand 3	B	155	158	anti-parallel

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There are 8 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	139	146	anti-parallel
Strand 3	B	127	136	anti-parallel
Strand 4	B	164	171	anti-parallel
Strand 5	B	68	73	anti-parallel
Strand 6	B	58	64	anti-parallel
Strand 7	B	202	207	parallel
Strand 8	B	214	216	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	101	first strand
Strand 2	D	11	12	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	250	258	anti-parallel
Strand 3	B	245	247	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	242	first strand
Strand 2	B	250	258	anti-parallel
Strand 3	B	319	326	anti-parallel
Strand 4	B	265	270	parallel
Strand 5	B	274	275	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	441	446	first strand
Strand 2	B	419	424	parallel
Strand 3	B	493	495	parallel
Strand 4	B	527	529	parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	542	546	first strand
Strand 2	B	535	539	anti-parallel
Strand 3	B	735	738	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	575	576	first strand
Strand 2	B	565	566	anti-parallel
Strand 3	B	707	708	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	652	first strand
Strand 2	B	661	667	anti-parallel
Strand 3	B	672	676	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	139	146	anti-parallel
Strand 3	D	155	159	anti-parallel

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There are 8 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	149	150	first strand
Strand 2	D	139	146	anti-parallel
Strand 3	D	127	136	anti-parallel
Strand 4	D	164	171	anti-parallel
Strand 5	D	69	73	anti-parallel
Strand 6	D	58	63	anti-parallel
Strand 7	D	202	207	parallel
Strand 8	D	213	216	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	242	first strand
Strand 2	D	250	258	anti-parallel
Strand 3	D	245	247	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	241	242	first strand
Strand 2	D	250	258	anti-parallel
Strand 3	D	319	326	anti-parallel
Strand 4	D	264	270	parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	441	446	first strand
Strand 2	D	419	424	parallel
Strand 3	D	493	495	parallel
Strand 4	D	527	529	parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	542	546	first strand
Strand 2	D	535	539	anti-parallel
Strand 3	D	735	738	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	565	566	first strand
Strand 2	D	707	708	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	646	652	first strand
Strand 2	D	661	667	anti-parallel
Strand 3	D	672	676	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RKW

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RKW