Analysis of interatomic Contacts of Structural Units in PDB entry:
6RKX


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RKX entry

There is 1 chain in PDB entry 6RKX (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 39LYS 453
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 6RKX. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 67Right-handed alpha
Helix 2
AA2
A
81 92Right-handed alpha
Helix 3
AA3
A
102 104Right-handed 310
Helix 4
AA4
A
105 112Right-handed alpha
Helix 5
AA5
A
118 125Right-handed alpha
Helix 6
AA6
A
134 139Right-handed alpha
Helix 7
AA7
A
169 175Right-handed alpha
Helix 8
AA8
A
187 199Right-handed alpha
Helix 9
AA9
A
216 228Right-handed alpha
Helix 10
AB1
A
244 260Right-handed alpha
Helix 11
AB2
A
266 273Right-handed alpha
Helix 12
AB3
A
274 281Right-handed alpha
Helix 13
AB4
A
290 292Right-handed 310
Helix 14
AB5
A
293 301Right-handed alpha
Helix 15
AB6
A
335 348Right-handed alpha
Helix 16
AB7
A
349 359Right-handed alpha
Helix 17
AB8
A
366 376Right-handed alpha
Helix 18
AB9
A
384 393Right-handed alpha
Helix 19
AC1
A
398 403Right-handed 310
Helix 20
AC2
A
406 415Right-handed alpha
Helix 21
AC3
A
416 421Right-handed alpha
Helix 22
AC4
A
425 452Right-handed alpha
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There are 4 sheets in PDB entry 6RKX. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 77first strand
Strand 2
A
40 47parallel
Strand 3
A
98 101parallel
Strand 4
A
326 329anti-parallel
Strand 5
A
156 157anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
142 143first strand
Strand 2
A
152 153anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
320 323anti-parallel
Strand 3
A
395 396parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
284 289parallel
Strand 3
A
164 168anti-parallel
Strand 4
A
305 308anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il