Analysis of interatomic Contacts of Structural Units in PDB entry:
6RLO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RLO entry

There are 12 chains in PDB entry 6RLO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 4	LYS 229
B	ASP 1	GLU 229
I	LYS 114	ASP 190
C	VAL 4	LYS 229
D	ASP 1	GLY 228
J	LYS 114	ASN 191
E	VAL 4	PRO 228
F	ASP 1	ARG 227
K	LYS 114	ASP 190
G	VAL 4	LYS 229
H	ASP 1	GLY 228
L	LYS 114	ASN 191

There are 56 helices in PDB entry 6RLO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	37	Right-handed 310
Helix 2	AA2	A	82	84	Right-handed 310
Helix 3	AA3	A	95	99	Right-handed 310
Helix 4	AA4	A	171	173	Right-handed 310
Helix 5	AA5	A	202	204	Right-handed 310
Helix 6	AA6	A	216	219	Right-handed 310
Helix 7	AA7	B	95	99	Right-handed 310
Helix 8	AA8	B	137	144	Right-handed alpha
Helix 9	AA9	B	199	204	Right-handed alpha
Helix 10	AB1	I	115	134	Right-handed alpha
Helix 11	AB2	I	136	138	Right-handed 310
Helix 12	AB3	I	139	151	Right-handed alpha
Helix 13	AB4	I	160	167	Right-handed 310
Helix 14	AB5	I	180	190	Right-handed alpha
Helix 15	AB6	C	29	37	Right-handed 310
Helix 16	AB7	C	82	84	Right-handed 310
Helix 17	AB8	C	95	99	Right-handed 310
Helix 18	AB9	C	171	173	Right-handed 310
Helix 19	AC1	C	202	204	Right-handed 310
Helix 20	AC2	C	216	219	Right-handed 310
Helix 21	AC3	D	95	99	Right-handed 310
Helix 22	AC4	D	137	144	Right-handed alpha
Helix 23	AC5	D	199	204	Right-handed alpha
Helix 24	AC6	J	115	134	Right-handed alpha
Helix 25	AC7	J	136	138	Right-handed 310
Helix 26	AC8	J	139	151	Right-handed alpha
Helix 27	AC9	J	160	167	Right-handed 310
Helix 28	AD1	J	180	190	Right-handed alpha
Helix 29	AD2	E	29	37	Right-handed 310
Helix 30	AD3	E	82	84	Right-handed 310
Helix 31	AD4	E	95	99	Right-handed 310
Helix 32	AD5	E	171	173	Right-handed 310
Helix 33	AD6	E	202	204	Right-handed 310
Helix 34	AD7	E	216	219	Right-handed 310
Helix 35	AD8	F	95	99	Right-handed 310
Helix 36	AD9	F	137	144	Right-handed alpha
Helix 37	AE1	F	199	204	Right-handed alpha
Helix 38	AE2	K	115	134	Right-handed alpha
Helix 39	AE3	K	136	138	Right-handed 310
Helix 40	AE4	K	139	151	Right-handed alpha
Helix 41	AE5	K	160	167	Right-handed 310
Helix 42	AE6	K	180	190	Right-handed alpha
Helix 43	AE7	G	29	37	Right-handed 310
Helix 44	AE8	G	82	84	Right-handed 310
Helix 45	AE9	G	95	99	Right-handed 310
Helix 46	AF1	G	171	173	Right-handed 310
Helix 47	AF2	G	202	204	Right-handed 310
Helix 48	AF3	G	216	219	Right-handed 310
Helix 49	AF4	H	95	99	Right-handed 310
Helix 50	AF5	H	137	144	Right-handed alpha
Helix 51	AF6	H	199	204	Right-handed alpha
Helix 52	AF7	L	115	134	Right-handed alpha
Helix 53	AF8	L	136	138	Right-handed 310
Helix 54	AF9	L	139	151	Right-handed alpha
Helix 55	AG1	L	160	167	Right-handed 310
Helix 56	AG2	L	180	190	Right-handed alpha

There are 44 sheets in PDB entry 6RLO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	7	first strand
Strand 2	A	19	24	anti-parallel
Strand 3	A	86	91	anti-parallel
Strand 4	A	77	81	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	122	126	parallel
Strand 3	A	100	108	anti-parallel
Strand 4	A	38	44	anti-parallel
Strand 5	A	51	56	anti-parallel
Strand 6	A	65	67	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	11	13	first strand
Strand 2	A	122	126	parallel
Strand 3	A	100	108	anti-parallel
Strand 4	A	112	117	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	150	160	anti-parallel
Strand 3	A	191	200	anti-parallel
Strand 4	A	178	180	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	135	139	first strand
Strand 2	A	150	160	anti-parallel
Strand 3	A	191	200	anti-parallel
Strand 4	A	184	185	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	169	first strand
Strand 2	A	210	215	anti-parallel
Strand 3	A	220	225	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	4	7	first strand
Strand 2	B	19	25	anti-parallel
Strand 3	B	86	91	anti-parallel
Strand 4	B	76	83	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	10	14	first strand
Strand 2	B	118	123	parallel
Strand 3	B	100	106	anti-parallel
Strand 4	B	39	44	anti-parallel
Strand 5	B	51	55	anti-parallel
Strand 6	B	66	67	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	36	37	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	130	134	first strand
Strand 2	B	145	155	anti-parallel
Strand 3	B	189	198	anti-parallel
Strand 4	B	175	179	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	161	166	anti-parallel
Strand 3	B	207	213	anti-parallel
Strand 4	B	221	226	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	7	first strand
Strand 2	C	19	24	anti-parallel
Strand 3	C	86	91	anti-parallel
Strand 4	C	77	81	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	122	126	parallel
Strand 3	C	100	108	anti-parallel
Strand 4	C	38	44	anti-parallel
Strand 5	C	51	56	anti-parallel
Strand 6	C	65	67	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	11	13	first strand
Strand 2	C	122	126	parallel
Strand 3	C	100	108	anti-parallel
Strand 4	C	112	117	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	139	first strand
Strand 2	C	150	160	anti-parallel
Strand 3	C	191	200	anti-parallel
Strand 4	C	178	180	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	135	139	first strand
Strand 2	C	150	160	anti-parallel
Strand 3	C	191	200	anti-parallel
Strand 4	C	184	185	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	166	169	first strand
Strand 2	C	210	215	anti-parallel
Strand 3	C	220	225	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	4	7	first strand
Strand 2	D	19	25	anti-parallel
Strand 3	D	86	91	anti-parallel
Strand 4	D	76	83	anti-parallel

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There are 6 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	10	14	first strand
Strand 2	D	118	123	parallel
Strand 3	D	100	106	anti-parallel
Strand 4	D	39	44	anti-parallel
Strand 5	D	51	55	anti-parallel
Strand 6	D	66	67	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	31	first strand
Strand 2	D	36	37	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	130	134	first strand
Strand 2	D	145	155	anti-parallel
Strand 3	D	189	198	anti-parallel
Strand 4	D	175	179	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	169	170	first strand
Strand 2	D	161	166	anti-parallel
Strand 3	D	207	213	anti-parallel
Strand 4	D	221	226	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	5	7	first strand
Strand 2	E	19	24	anti-parallel
Strand 3	E	86	91	anti-parallel
Strand 4	E	77	81	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	122	126	parallel
Strand 3	E	100	108	anti-parallel
Strand 4	E	38	44	anti-parallel
Strand 5	E	51	56	anti-parallel
Strand 6	E	65	67	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	122	126	parallel
Strand 3	E	100	108	anti-parallel
Strand 4	E	112	117	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	139	first strand
Strand 2	E	150	160	anti-parallel
Strand 3	E	191	200	anti-parallel
Strand 4	E	178	180	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	135	139	first strand
Strand 2	E	150	160	anti-parallel
Strand 3	E	191	200	anti-parallel
Strand 4	E	184	185	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	166	169	first strand
Strand 2	E	210	215	anti-parallel
Strand 3	E	220	225	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	4	7	first strand
Strand 2	F	19	25	anti-parallel
Strand 3	F	86	91	anti-parallel
Strand 4	F	76	83	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	10	14	first strand
Strand 2	F	118	123	parallel
Strand 3	F	100	106	anti-parallel
Strand 4	F	39	44	anti-parallel
Strand 5	F	51	55	anti-parallel
Strand 6	F	66	67	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	30	31	first strand
Strand 2	F	36	37	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	130	134	first strand
Strand 2	F	145	155	anti-parallel
Strand 3	F	189	198	anti-parallel
Strand 4	F	175	179	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	169	170	first strand
Strand 2	F	161	166	anti-parallel
Strand 3	F	207	213	anti-parallel
Strand 4	F	221	226	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	5	7	first strand
Strand 2	G	19	24	anti-parallel
Strand 3	G	86	91	anti-parallel
Strand 4	G	77	81	anti-parallel

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There are 6 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	122	126	parallel
Strand 3	G	100	108	anti-parallel
Strand 4	G	38	44	anti-parallel
Strand 5	G	51	56	anti-parallel
Strand 6	G	65	67	anti-parallel

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There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	13	first strand
Strand 2	G	122	126	parallel
Strand 3	G	100	108	anti-parallel
Strand 4	G	112	117	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	139	first strand
Strand 2	G	150	160	anti-parallel
Strand 3	G	191	200	anti-parallel
Strand 4	G	178	180	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	135	139	first strand
Strand 2	G	150	160	anti-parallel
Strand 3	G	191	200	anti-parallel
Strand 4	G	184	185	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	166	169	first strand
Strand 2	G	210	215	anti-parallel
Strand 3	G	220	225	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	4	7	first strand
Strand 2	H	19	25	anti-parallel
Strand 3	H	86	91	anti-parallel
Strand 4	H	76	83	anti-parallel

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There are 6 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	14	first strand
Strand 2	H	118	123	parallel
Strand 3	H	100	106	anti-parallel
Strand 4	H	39	44	anti-parallel
Strand 5	H	51	55	anti-parallel
Strand 6	H	66	67	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	30	31	first strand
Strand 2	H	36	37	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	130	134	first strand
Strand 2	H	145	155	anti-parallel
Strand 3	H	189	198	anti-parallel
Strand 4	H	175	179	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	169	170	first strand
Strand 2	H	161	166	anti-parallel
Strand 3	H	207	213	anti-parallel
Strand 4	H	221	226	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RLO

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RLO