Analysis of interatomic Contacts of Structural Units in PDB entry:
6RMA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RMA entry

There are 2 chains in PDB entry 6RMA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 266GLY 920
B
 ASP 213ALA 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 32 helices in PDB entry 6RMA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
272 296Right-handed alpha
Helix 2
AA2
A
299 301Right-handed 310
Helix 3
AA3
A
302 313Right-handed alpha
Helix 4
AA4
A
325 337Right-handed alpha
Helix 5
AA5
A
352 367Right-handed alpha
Helix 6
AA6
A
396 406Right-handed alpha
Helix 7
AA7
A
420 423Right-handed 310
Helix 8
AA8
A
424 441Right-handed alpha
Helix 9
AA9
A
455 462Right-handed alpha
Helix 10
AB1
A
488 504Right-handed alpha
Helix 11
AB2
A
515 534Right-handed alpha
Helix 12
AB3
A
535 537Right-handed 310
Helix 13
AB4
A
550 558Right-handed alpha
Helix 14
AB5
A
573 578Right-handed alpha
Helix 15
AB6
A
615 625Right-handed alpha
Helix 16
AB7
A
626 628Right-handed 310
Helix 17
AB8
A
639 646Right-handed alpha
Helix 18
AB9
A
653 657Right-handed 310
Helix 19
AC1
A
660 670Right-handed alpha
Helix 20
AC2
A
685 699Right-handed alpha
Helix 21
AC3
A
709 717Right-handed alpha
Helix 22
AC4
A
721 735Right-handed alpha
Helix 23
AC5
A
736 747Right-handed alpha
Helix 24
AC6
A
748 750Right-handed 310
Helix 25
AC7
A
760 770Right-handed alpha
Helix 26
AC8
A
776 792Right-handed alpha
Helix 27
AC9
A
795 802Right-handed alpha
Helix 28
AD1
A
805 826Right-handed alpha
Helix 29
AD2
A
840 852Right-handed alpha
Helix 30
AD3
A
880 885Right-handed 310
Helix 31
AD4
A
912 920Right-handed alpha
Helix 32
AD5
B
214 221Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 6RMA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 384first strand
Strand 2
A
375 379anti-parallel
Strand 3
A
391 395parallel
Strand 4
A
345 350parallel
Strand 5
A
412 418parallel
Strand 6
A
445 450parallel
Strand 7
A
315 320parallel
Strand 8
A
467 470parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
477 480first strand
Strand 2
A
632 636parallel
Strand 3
A
584 589parallel
Strand 4
A
508 512parallel
Strand 5
A
566 571parallel
Strand 6
A
540 545parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
592 599first strand
Strand 2
A
606 613anti-parallel
Strand 3
A
891 899parallel
Strand 4
A
903 910anti-parallel
Strand 5
A
873 876parallel
Strand 6
A
865 867anti-parallel
Strand 7
A
855 858anti-parallel
Strand 8
A
891 899anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il