Analysis of interatomic Contacts of Structural Units in PDB entry:
6RME

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 6RME entry

There are 8 chains in PDB entry 6RME (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TRP 47	LEU 430
B	GLN 46	LEU 430
C	SER 38	ASN 431
D	GLN 46	LEU 430
E	GLN 46	ASN 431
F	PHE 44	ASN 431
G	TRP 47	LEU 430
H	GLN 46	ASN 431

There are149 helices in PDB entry 6RME. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	58	Right-handed alpha
Helix 2	AA2	A	60	76	Right-handed alpha
Helix 3	AA3	A	83	100	Right-handed alpha
Helix 4	AA4	A	104	110	Right-handed alpha
Helix 5	AA5	A	121	134	Right-handed alpha
Helix 6	AA6	A	135	138	Right-handed 310
Helix 7	AA7	A	144	159	Right-handed alpha
Helix 8	AA8	A	160	163	Right-handed 310
Helix 9	AA9	A	170	175	Right-handed alpha
Helix 10	AB1	A	184	196	Right-handed alpha
Helix 11	AB2	A	211	230	Right-handed alpha
Helix 12	AB3	A	235	237	Right-handed 310
Helix 13	AB4	A	262	266	Right-handed 310
Helix 14	AB5	A	274	296	Right-handed alpha
Helix 15	AB6	A	331	349	Right-handed alpha
Helix 16	AB7	A	370	383	Right-handed alpha
Helix 17	AB8	A	385	387	Right-handed 310
Helix 18	AB9	A	402	408	Right-handed 310
Helix 19	AC1	A	416	429	Right-handed alpha
Helix 20	AC2	B	52	58	Right-handed alpha
Helix 21	AC3	B	60	76	Right-handed alpha
Helix 22	AC4	B	83	100	Right-handed alpha
Helix 23	AC5	B	104	110	Right-handed alpha
Helix 24	AC6	B	121	134	Right-handed alpha
Helix 25	AC7	B	135	138	Right-handed 310
Helix 26	AC8	B	144	159	Right-handed alpha
Helix 27	AC9	B	160	163	Right-handed 310
Helix 28	AD1	B	184	198	Right-handed alpha
Helix 29	AD2	B	211	219	Right-handed alpha
Helix 30	AD3	B	219	230	Right-handed alpha
Helix 31	AD4	B	233	237	Right-handed 310
Helix 32	AD5	B	274	296	Right-handed alpha
Helix 33	AD6	B	331	348	Right-handed alpha
Helix 34	AD7	B	370	382	Right-handed alpha
Helix 35	AD8	B	385	387	Right-handed 310
Helix 36	AD9	B	402	408	Right-handed 310
Helix 37	AE1	B	416	429	Right-handed alpha
Helix 38	AE2	C	39	48	Right-handed alpha
Helix 39	AE3	C	52	58	Right-handed alpha
Helix 40	AE4	C	60	76	Right-handed alpha
Helix 41	AE5	C	77	81	Right-handed 310
Helix 42	AE6	C	83	100	Right-handed alpha
Helix 43	AE7	C	104	110	Right-handed alpha
Helix 44	AE8	C	121	134	Right-handed alpha
Helix 45	AE9	C	135	138	Right-handed 310
Helix 46	AF1	C	144	159	Right-handed alpha
Helix 47	AF2	C	160	163	Right-handed 310
Helix 48	AF3	C	184	196	Right-handed alpha
Helix 49	AF4	C	211	230	Right-handed alpha
Helix 50	AF5	C	233	237	Right-handed 310
Helix 51	AF6	C	262	266	Right-handed 310
Helix 52	AF7	C	274	296	Right-handed alpha
Helix 53	AF8	C	331	349	Right-handed alpha
Helix 54	AF9	C	370	382	Right-handed alpha
Helix 55	AG1	C	385	387	Right-handed 310
Helix 56	AG2	C	402	408	Right-handed 310
Helix 57	AG3	C	416	429	Right-handed alpha
Helix 58	AG4	D	52	58	Right-handed alpha
Helix 59	AG5	D	60	76	Right-handed alpha
Helix 60	AG6	D	83	100	Right-handed alpha
Helix 61	AG7	D	104	110	Right-handed alpha
Helix 62	AG8	D	121	134	Right-handed alpha
Helix 63	AG9	D	135	138	Right-handed 310
Helix 64	AH1	D	144	159	Right-handed alpha
Helix 65	AH2	D	160	163	Right-handed 310
Helix 66	AH3	D	184	198	Right-handed alpha
Helix 67	AH4	D	211	219	Right-handed alpha
Helix 68	AH5	D	219	230	Right-handed alpha
Helix 69	AH6	D	234	237	Right-handed 310
Helix 70	AH7	D	262	267	Right-handed alpha
Helix 71	AH8	D	274	296	Right-handed alpha
Helix 72	AH9	D	331	349	Right-handed alpha
Helix 73	AI1	D	370	382	Right-handed alpha
Helix 74	AI2	D	385	387	Right-handed 310
Helix 75	AI3	D	402	408	Right-handed 310
Helix 76	AI4	D	416	429	Right-handed alpha
Helix 77	AI5	E	52	58	Right-handed alpha
Helix 78	AI6	E	60	76	Right-handed alpha
Helix 79	AI7	E	83	100	Right-handed alpha
Helix 80	AI8	E	104	110	Right-handed alpha
Helix 81	AI9	E	121	134	Right-handed alpha
Helix 82	AJ1	E	135	138	Right-handed 310
Helix 83	AJ2	E	144	159	Right-handed alpha
Helix 84	AJ3	E	160	163	Right-handed 310
Helix 85	AJ4	E	186	198	Right-handed alpha
Helix 86	AJ5	E	211	230	Right-handed alpha
Helix 87	AJ6	E	234	237	Right-handed 310
Helix 88	AJ7	E	262	267	Right-handed alpha
Helix 89	AJ8	E	268	270	Right-handed 310
Helix 90	AJ9	E	274	297	Right-handed alpha
Helix 91	AK1	E	331	349	Right-handed alpha
Helix 92	AK2	E	370	383	Right-handed alpha
Helix 93	AK3	E	385	387	Right-handed 310
Helix 94	AK4	E	402	408	Right-handed 310
Helix 95	AK5	E	416	429	Right-handed alpha
Helix 96	AK6	F	52	58	Right-handed alpha
Helix 97	AK7	F	60	76	Right-handed alpha
Helix 98	AK8	F	83	100	Right-handed alpha
Helix 99	AK9	F	104	110	Right-handed alpha
Helix 100	AL1	F	121	134	Right-handed alpha
Helix 101	AL2	F	135	138	Right-handed 310
Helix 102	AL3	F	144	159	Right-handed alpha
Helix 103	AL4	F	160	163	Right-handed 310
Helix 104	AL5	F	170	175	Right-handed alpha
Helix 105	AL6	F	184	196	Right-handed alpha
Helix 106	AL7	F	211	219	Right-handed alpha
Helix 107	AL8	F	219	228	Right-handed alpha
Helix 108	AL9	F	262	266	Right-handed 310
Helix 109	AM1	F	274	296	Right-handed alpha
Helix 110	AM2	F	331	349	Right-handed alpha
Helix 111	AM3	F	370	383	Right-handed alpha
Helix 112	AM4	F	385	387	Right-handed 310
Helix 113	AM5	F	402	408	Right-handed 310
Helix 114	AM6	F	416	429	Right-handed alpha
Helix 115	AM7	G	52	58	Right-handed alpha
Helix 116	AM8	G	60	76	Right-handed alpha
Helix 117	AM9	G	83	100	Right-handed alpha
Helix 118	AN1	G	104	110	Right-handed alpha
Helix 119	AN2	G	121	134	Right-handed alpha
Helix 120	AN3	G	135	138	Right-handed 310
Helix 121	AN4	G	144	159	Right-handed alpha
Helix 122	AN5	G	160	163	Right-handed 310
Helix 123	AN6	G	184	198	Right-handed alpha
Helix 124	AN7	G	212	219	Right-handed alpha
Helix 125	AN8	G	219	230	Right-handed alpha
Helix 126	AN9	G	233	238	Right-handed 310
Helix 127	AO1	G	262	266	Right-handed 310
Helix 128	AO2	G	274	296	Right-handed alpha
Helix 129	AO3	G	331	349	Right-handed alpha
Helix 130	AO4	G	370	383	Right-handed alpha
Helix 131	AO5	G	385	387	Right-handed 310
Helix 132	AO6	G	402	409	Right-handed 310
Helix 133	AO7	G	416	429	Right-handed alpha
Helix 134	AO8	H	52	58	Right-handed alpha
Helix 135	AO9	H	60	76	Right-handed alpha
Helix 136	AP1	H	83	100	Right-handed alpha
Helix 137	AP2	H	104	110	Right-handed alpha
Helix 138	AP3	H	121	134	Right-handed alpha
Helix 139	AP4	H	144	158	Right-handed alpha
Helix 140	AP5	H	184	198	Right-handed alpha
Helix 141	AP6	H	211	219	Right-handed alpha
Helix 142	AP7	H	219	230	Right-handed alpha
Helix 143	AP8	H	233	237	Right-handed 310
Helix 144	AP9	H	274	296	Right-handed alpha
Helix 145	AQ1	H	331	349	Right-handed alpha
Helix 146	AQ2	H	370	383	Right-handed alpha
Helix 147	AQ3	H	385	387	Right-handed 310
Helix 148	AQ4	H	402	408	Right-handed 310
Helix 149	AQ5	H	416	428	Right-handed alpha

There are 17 sheets in PDB entry 6RME. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	260	first strand
Strand 2	A	248	252	anti-parallel
Strand 3	A	239	243	anti-parallel
Strand 4	A	199	203	parallel
Strand 5	A	166	169	parallel
Strand 6	A	389	393	parallel
Strand 7	A	410	413	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	304	first strand
Strand 2	A	308	312	anti-parallel
Strand 3	A	363	367	anti-parallel
Strand 4	A	356	360	anti-parallel

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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	260	first strand
Strand 2	B	248	252	anti-parallel
Strand 3	B	239	243	anti-parallel
Strand 4	B	199	203	parallel
Strand 5	B	166	169	parallel
Strand 6	B	389	393	parallel
Strand 7	B	410	413	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	300	305	first strand
Strand 2	B	308	313	anti-parallel
Strand 3	B	363	367	anti-parallel
Strand 4	B	356	360	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	260	first strand
Strand 2	C	248	252	anti-parallel
Strand 3	C	239	243	anti-parallel
Strand 4	C	199	203	parallel
Strand 5	C	166	169	parallel
Strand 6	C	389	393	parallel
Strand 7	C	410	413	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	300	305	first strand
Strand 2	C	308	313	anti-parallel
Strand 3	C	364	367	anti-parallel
Strand 4	C	356	359	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	257	260	first strand
Strand 2	D	248	253	anti-parallel
Strand 3	D	239	243	anti-parallel
Strand 4	D	199	203	parallel
Strand 5	D	166	169	parallel
Strand 6	D	389	393	parallel
Strand 7	D	410	413	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	300	305	first strand
Strand 2	D	308	313	anti-parallel
Strand 3	D	364	368	anti-parallel
Strand 4	D	355	359	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	260	first strand
Strand 2	E	248	252	anti-parallel
Strand 3	E	239	243	anti-parallel
Strand 4	E	199	203	parallel
Strand 5	E	166	169	parallel
Strand 6	E	389	393	parallel
Strand 7	E	410	413	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	300	305	first strand
Strand 2	E	308	313	anti-parallel
Strand 3	E	364	367	anti-parallel
Strand 4	E	356	358	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	258	260	first strand
Strand 2	F	248	252	anti-parallel
Strand 3	F	239	243	anti-parallel
Strand 4	F	199	203	parallel
Strand 5	F	166	169	parallel
Strand 6	F	389	393	parallel
Strand 7	F	410	413	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	300	304	first strand
Strand 2	F	308	313	anti-parallel
Strand 3	F	364	367	anti-parallel
Strand 4	F	356	358	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	200	202	first strand
Strand 2	G	166	169	parallel
Strand 3	G	389	393	parallel
Strand 4	G	410	413	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	240	243	first strand
Strand 2	G	248	251	anti-parallel
Strand 3	G	259	260	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	300	305	first strand
Strand 2	G	308	313	anti-parallel
Strand 3	G	363	368	anti-parallel
Strand 4	G	355	360	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	258	260	first strand
Strand 2	H	248	252	anti-parallel
Strand 3	H	239	243	anti-parallel
Strand 4	H	200	203	parallel
Strand 5	H	166	169	parallel
Strand 6	H	389	393	parallel
Strand 7	H	410	413	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	300	305	first strand
Strand 2	H	308	313	anti-parallel
Strand 3	H	364	367	anti-parallel
Strand 4	H	356	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 6RME

Analysis of interatomic Contacts of Structural Units in PDB entry:
6RME