Analysis of interatomic Contacts of Structural Units in PDB entry:
6RML


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RML entry


Note, this PDB entry contains modified residue(s) PHOSPHOTHREONINE (TPO) . This residue is treated as heterogroup (ligand) both in the PDB entry and in LPC/CSU analysis.

There are 4 chains in PDB entry 6RML (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 7THR 284
A
 GLU 7THR 284
C
 GLU 665GLU 669
C
 PRO 671GLU 673
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 27 helices in PDB entry 6RML. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
20 34Right-handed alpha
Helix 2
AA2
B
35 37Right-handed 310
Helix 3
AA3
B
43 49Right-handed alpha
Helix 4
AA4
B
65 75Right-handed alpha
Helix 5
AA5
B
80 90Right-handed alpha
Helix 6
AA6
B
117 131Right-handed alpha
Helix 7
AA7
B
153 162Right-handed alpha
Helix 8
AA8
B
168 181Right-handed alpha
Helix 9
AA9
B
186 190Right-handed 310
Helix 10
AB1
B
191 196Right-handed 310
Helix 11
AB2
B
211 225Right-handed alpha
Helix 12
AB3
B
248 257Right-handed alpha
Helix 13
AB4
B
263 274Right-handed alpha
Helix 14
AB5
B
278 283Right-handed 310
Helix 15
AB6
A
20 31Right-handed alpha
Helix 16
AB7
A
35 37Right-handed 310
Helix 17
AB8
A
43 50Right-handed alpha
Helix 18
AB9
A
65 75Right-handed alpha
Helix 19
AC1
A
80 90Right-handed alpha
Helix 20
AC2
A
117 131Right-handed alpha
Helix 21
AC3
A
153 162Right-handed alpha
Helix 22
AC4
A
168 181Right-handed alpha
Helix 23
AC5
A
191 196Right-handed 310
Helix 24
AC6
A
211 225Right-handed alpha
Helix 25
AC7
A
248 256Right-handed alpha
Helix 26
AC8
A
263 274Right-handed alpha
Helix 27
AC9
A
278 283Right-handed 310
Back to top of page

There are 7 sheets in PDB entry 6RML. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
39 42first strand
Strand 2
B
11 14parallel
Strand 3
B
57 59parallel
Strand 4
B
77 79parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
134 135first strand
Strand 2
B
110 114parallel
Strand 3
B
145 148parallel
Strand 4
B
166 167parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
228 229first strand
Strand 2
B
204 207parallel
Strand 3
B
240 242parallel
Strand 4
B
260 262parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
C
666 667anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 42first strand
Strand 2
A
11 14parallel
Strand 3
A
57 59parallel
Strand 4
A
78 79parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
110 114parallel
Strand 3
A
145 148parallel
Strand 4
A
166 167parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
228 229first strand
Strand 2
A
204 207parallel
Strand 3
A
240 242parallel
Strand 4
A
260 262parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il