Analysis of interatomic Contacts of Structural Units in PDB entry:
6RMR


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RMR entry

There are 2 chains in PDB entry 6RMR (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 1VAL 390
B
 VAL 3LYS 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 6RMR. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
50 71Right-handed alpha
Helix 2
AA2
A
92 107Right-handed alpha
Helix 3
AA3
A
135 152Right-handed alpha
Helix 4
AA4
A
155 167Right-handed alpha
Helix 5
AA5
A
168 171Right-handed 310
Helix 6
AA6
A
201 220Right-handed alpha
Helix 7
AA7
A
222 230Right-handed 310
Helix 8
AA8
A
233 253Right-handed alpha
Helix 9
AA9
A
254 262Right-handed alpha
Helix 10
AB1
A
262 274Right-handed alpha
Helix 11
AB2
A
289 300Right-handed alpha
Helix 12
AB3
A
343 350Right-handed alpha
Helix 13
AB4
A
379 390Right-handed alpha
Helix 14
AB5
B
29 34Right-handed alpha
Helix 15
AB6
B
50 71Right-handed alpha
Helix 16
AB7
B
81 83Right-handed 310
Helix 17
AB8
B
92 107Right-handed alpha
Helix 18
AB9
B
135 152Right-handed alpha
Helix 19
AC1
B
155 167Right-handed alpha
Helix 20
AC2
B
168 170Right-handed 310
Helix 21
AC3
B
171 176Right-handed alpha
Helix 22
AC4
B
201 220Right-handed alpha
Helix 23
AC5
B
222 230Right-handed 310
Helix 24
AC6
B
233 253Right-handed alpha
Helix 25
AC7
B
254 262Right-handed alpha
Helix 26
AC8
B
262 275Right-handed alpha
Helix 27
AC9
B
289 300Right-handed alpha
Helix 28
AD1
B
343 350Right-handed alpha
Helix 29
AD2
B
379 391Right-handed alpha
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There are 6 sheets in PDB entry 6RMR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
85 89parallel
Strand 3
A
283 288parallel
Strand 4
A
7 17parallel
Strand 5
A
319 327anti-parallel
Strand 6
A
332 341anti-parallel
Strand 7
A
360 364anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
114 115first strand
Strand 2
A
85 89parallel
Strand 3
A
283 288parallel
Strand 4
A
7 17parallel
Strand 5
A
319 327anti-parallel
Strand 6
A
332 341anti-parallel
Strand 7
A
377 378anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 190first strand
Strand 2
A
198 200anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
85 89parallel
Strand 3
B
283 288parallel
Strand 4
B
7 17parallel
Strand 5
B
319 327anti-parallel
Strand 6
B
332 341anti-parallel
Strand 7
B
360 364anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
114 115first strand
Strand 2
B
85 89parallel
Strand 3
B
283 288parallel
Strand 4
B
7 17parallel
Strand 5
B
319 327anti-parallel
Strand 6
B
332 341anti-parallel
Strand 7
B
377 378anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 190first strand
Strand 2
B
198 200anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il