Analysis of interatomic Contacts of Structural Units in PDB entry:
6RN1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RN1 entry

There are 2 chains in PDB entry 6RN1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 60ASN 431
B
 ASP 60HIS 429
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 6RN1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
60 76Right-handed alpha
Helix 2
AA2
A
83 100Right-handed alpha
Helix 3
AA3
A
104 110Right-handed alpha
Helix 4
AA4
A
121 134Right-handed alpha
Helix 5
AA5
A
135 138Right-handed 310
Helix 6
AA6
A
144 159Right-handed alpha
Helix 7
AA7
A
184 198Right-handed alpha
Helix 8
AA8
A
211 216Right-handed alpha
Helix 9
AA9
A
219 230Right-handed alpha
Helix 10
AB1
A
234 237Right-handed 310
Helix 11
AB2
A
274 297Right-handed alpha
Helix 12
AB3
A
331 349Right-handed alpha
Helix 13
AB4
A
370 382Right-handed alpha
Helix 14
AB5
A
385 387Right-handed 310
Helix 15
AB6
A
402 408Right-handed 310
Helix 16
AB7
A
416 428Right-handed alpha
Helix 17
AB8
B
61 76Right-handed alpha
Helix 18
AB9
B
83 100Right-handed alpha
Helix 19
AC1
B
104 110Right-handed alpha
Helix 20
AC2
B
121 134Right-handed alpha
Helix 21
AC3
B
135 138Right-handed 310
Helix 22
AC4
B
144 159Right-handed alpha
Helix 23
AC5
B
184 198Right-handed alpha
Helix 24
AC6
B
211 219Right-handed alpha
Helix 25
AC7
B
220 228Right-handed alpha
Helix 26
AC8
B
262 266Right-handed 310
Helix 27
AC9
B
274 297Right-handed alpha
Helix 28
AD1
B
331 349Right-handed alpha
Helix 29
AD2
B
370 383Right-handed alpha
Helix 30
AD3
B
385 387Right-handed 310
Helix 31
AD4
B
416 428Right-handed alpha
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There are 4 sheets in PDB entry 6RN1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
248 252anti-parallel
Strand 3
A
239 243anti-parallel
Strand 4
A
199 203parallel
Strand 5
A
166 170parallel
Strand 6
A
389 393parallel
Strand 7
A
410 413parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
301 305first strand
Strand 2
A
308 312anti-parallel
Strand 3
A
364 368anti-parallel
Strand 4
A
355 359anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
259 260first strand
Strand 2
B
248 251anti-parallel
Strand 3
B
239 243anti-parallel
Strand 4
B
199 203parallel
Strand 5
B
166 170parallel
Strand 6
B
389 393parallel
Strand 7
B
410 413parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 304first strand
Strand 2
B
308 313anti-parallel
Strand 3
B
364 367anti-parallel
Strand 4
B
356 359anti-parallel
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