Analysis of interatomic Contacts of Structural Units in PDB entry:
6RNH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 6RNH entry

There are 2 chains in PDB entry 6RNH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 10ASN 431
B
 LYS 59ASN 431
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 40 helices in PDB entry 6RNH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
32 37Right-handed alpha
Helix 2
AA2
A
38 48Right-handed alpha
Helix 3
AA3
A
48 60Right-handed alpha
Helix 4
AA4
A
60 76Right-handed alpha
Helix 5
AA5
A
83 100Right-handed alpha
Helix 6
AA6
A
104 110Right-handed alpha
Helix 7
AA7
A
111 114Right-handed 310
Helix 8
AA8
A
121 134Right-handed alpha
Helix 9
AA9
A
135 138Right-handed 310
Helix 10
AB1
A
144 160Right-handed alpha
Helix 11
AB2
A
171 175Right-handed alpha
Helix 12
AB3
A
184 198Right-handed alpha
Helix 13
AB4
A
211 219Right-handed alpha
Helix 14
AB5
A
219 230Right-handed alpha
Helix 15
AB6
A
231 237Right-handed 310
Helix 16
AB7
A
262 267Right-handed alpha
Helix 17
AB8
A
268 270Right-handed 310
Helix 18
AB9
A
275 297Right-handed alpha
Helix 19
AC1
A
331 349Right-handed alpha
Helix 20
AC2
A
370 383Right-handed alpha
Helix 21
AC3
A
385 387Right-handed 310
Helix 22
AC4
A
416 429Right-handed alpha
Helix 23
AC5
B
60 76Right-handed alpha
Helix 24
AC6
B
83 99Right-handed alpha
Helix 25
AC7
B
100 103Right-handed 310
Helix 26
AC8
B
104 110Right-handed alpha
Helix 27
AC9
B
121 134Right-handed alpha
Helix 28
AD1
B
135 138Right-handed 310
Helix 29
AD2
B
144 160Right-handed alpha
Helix 30
AD3
B
184 198Right-handed alpha
Helix 31
AD4
B
211 219Right-handed alpha
Helix 32
AD5
B
219 230Right-handed alpha
Helix 33
AD6
B
231 237Right-handed 310
Helix 34
AD7
B
262 267Right-handed alpha
Helix 35
AD8
B
274 297Right-handed alpha
Helix 36
AD9
B
331 349Right-handed alpha
Helix 37
AE1
B
370 382Right-handed alpha
Helix 38
AE2
B
385 387Right-handed 310
Helix 39
AE3
B
404 408Right-handed 310
Helix 40
AE4
B
416 431Right-handed alpha
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There are 5 sheets in PDB entry 6RNH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
258 260first strand
Strand 2
A
248 252anti-parallel
Strand 3
A
239 243anti-parallel
Strand 4
A
199 203parallel
Strand 5
A
166 170parallel
Strand 6
A
389 392parallel
Strand 7
A
410 412parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 304first strand
Strand 2
A
308 313anti-parallel
Strand 3
A
364 367anti-parallel
Strand 4
A
356 359anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
258 260first strand
Strand 2
B
248 252anti-parallel
Strand 3
B
239 243anti-parallel
Strand 4
B
199 203parallel
Strand 5
B
166 170parallel
Strand 6
B
389 392parallel
Strand 7
B
410 412parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 304first strand
Strand 2
B
308 313anti-parallel
Strand 3
B
364 368anti-parallel
Strand 4
B
355 358anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
315 317first strand
Strand 2
B
325 327anti-parallel
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